Annotation Detail for PTGFRN

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Basic Information Top

Gene Symbol:	PTGFRN ( CD315,CD9P-1,EWI-F,FLJ11001,FPRP,KIAA1436,SMAP-6 )
Gene Full Name:	prostaglandin F2 receptor negative regulator
Band:	1p13.1
Quick Links	Entrez ID:5738; OMIM: 601204; Uniprot ID:FPRP_HUMAN; ENSEMBL ID: ENSG00000134247; HGNC ID: 9601
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
44	N-linked (GlcNAc...).
286	N-linked (GlcNAc...).
300	N-linked (GlcNAc...).
383	N-linked (GlcNAc...).
413	N-linked (GlcNAc...).
427	Endoplasmic reticulum retention signal.
525	N-linked (GlcNAc...).
600	N-linked (GlcNAc...).
618	N-linked (GlcNAc...).
691	N-linked (GlcNAc...).
705	Cell attachment site (Potential).
875	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	117244873	117245506	633	9022
Oct1	Hela	GSE14283	117246172	117246212	40	8020

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	117334415	117335863	1448	645
P300	T30-glioblastoma	GSE21026	117333767	117335466	1699	122

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	117254254	117254771	517
CTCF	G2	GSE9613	117288711	117289087	376
CTCF	G2	GSE9613	117328759	117329087	328
ER	MCF7	GSE19013	117263767	117264578	811
H3K4me3	colorectal	cancer	117255311	117255601	290
H3ac	HepG2	E	117255100	117255703	603
H3ac	HepG2	E	117261182	117261536	354
Nanog	hES	GSE18292	117293881	117294160	279
Oct1	H2O2-Hela	GSE14283	117317748	117317777	29
Oct1	Hela	GSE14283	117316728	117316764	36
Oct1	Hela	GSE14283	117317748	117317777	29
Rb	Growing	GSE19898	117285386	117285551	165
TAF	k562	GSE8489	117254988	117256262	1274
TAF	k562	GSE8489	117334164	117334565	401
hScc1	Bcell	GSE12603	117254146	117254838	692
hScc1	Bcell	GSE12603	117293369	117293507	138
hScc1	Bcell	GSE12603	117330786	117330996	210

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1267	Unknown	pSILAC	miR-30	PTGFRN	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000134247		n_a	n_a	n_a	n_a	n_a

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018