AutismKB 2.0

Annotation Detail for SLC24A3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SLC24A3 ( NCKX3 )
Gene Full Name: solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
Band: 20p11.23
Quick LinksEntrez ID:57419; OMIM: 609839; Uniprot ID:NCKX3_HUMAN; ENSEMBL ID: ENSG00000185052; HGNC ID: 10977
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
71N-linked (GlcNAc...) (Potential).
86N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
71N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
86N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
71N-linkedHMM predict
86N-linkedHMM predict
308Phosphoserine(CAMK2)HMM predict
308Phosphoserine(PKG)HMM predict
364Phosphotyrosine(INSR)HMM predict
383N-linkedHMM predict
396N-linkedHMM predict
409N-linkedHMM predict
413N-linkedHMM predict
415N-linkedHMM predict
440Phosphothreonine(CDC2)HMM predict
440Phosphothreonine(MAPK)HMM predict
447Phosphothreonine(PKC)HMM predict
545Phosphoserine(IKK)HMM predict
614S-palmitoylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020689
  • Location:chr20 19141289-19651539
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 19134479 19135094 615 6503
Nanog hESGSE18292 19135876 19136681 805 5011
Sox2 hESGSE18292 19136122 19136584 462 4937
hScc1 BcellGSE12603 19134446 19135311 865 6411
hScc1 BcellGSE12603 19140656 19141077 421 423
hScc1 CdLSGSE12603 19134446 19135414 968 6360
hScc1 G2GSE9613 19134610 19135127 517 6421
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TFAP2C MCF7GSE21234 19663963 19664667 704 12776
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 19512564 19512743 179 0
CTCF CD4GSE12889 19591096 19591339 243 0
CTCF CD4GSE12889 19621351 19621599 248 0
CTCF CD4SISSRdata 19512564 19512743 179 0
CTCF CD4SISSRdata 19591096 19591339 243 0
CTCF CD4SISSRdata 19621351 19621599 248 0
CTCF HelaGSE12889 19557277 19557452 175 0
CTCF HelaGSE12889 19591127 19591302 175 0
CTCF G2GSE9613 19621331 19621660 329 0
ER MCF7GSE19013 19173101 19173662 561 0
ER MCF7GSE19013 19211974 19212777 803 0
ER MCF7GSE19013 19219375 19220042 667 0
ER MCF7GSE19013 19244702 19245562 860 0
ER MCF7GSE19013 19509870 19510716 846 0
FOXA1 MCF7GSE15244 19180374 19181613 1239 0
FOXA1 MCF7GSE15244 19203978 19204937 959 0
FOXA1 MCF7GSE15244 19211371 19212731 1360 0
FOXA1 MCF7GSE15244 19325239 19325810 571 0
FOXA1 eGFPGSE10845 19180374 19181613 1239 0
FOXA1 eGFPGSE10845 19203978 19204937 959 0
FOXA1 eGFPGSE10845 19211371 19212731 1360 0
FOXA1 eGFPGSE10845 19325239 19325810 571 0
Fos K562GSE19551 19194205 19194749 544 0
FoxA1 MCF7MACSdata 19212060 19212515 455 0
FoxA1 MCF7MACSdata 19325418 19325833 415 0
Myc K562GSE19551 19557287 19557653 366 0
NFkBII GM12878GSE19485 19610560 19611773 1213 0
NFkBII GM12892GSE19485 19610623 19611609 986 0
NRSF-mono JurkatQuESTdata 19545337 19545669 332 0
NRSF-mono JurkatQuESTdata 19636633 19636902 269 0
NRSF-poly JurkatQuESTdata 19576719 19576884 165 0
Nanog ESGSE20650 19548908 19549575 667 0
Nanog hESGSE18292 19351939 19352492 553 0
Nanog hESGSE18292 19481099 19481350 251 0
Nanog hESGSE18292 19548960 19549619 659 0
RARA MCF7GSE15244 19416084 19417006 922 0
Sox2 hESGSE18292 19351990 19352304 314 0
TFAP2C MCF7GSE21234 19180710 19182192 1482 0
TFAP2C MCF7GSE21234 19183524 19184187 663 0
TFAP2C MCF7GSE21234 19191101 19191897 796 0
TFAP2C MCF7GSE21234 19203693 19204778 1085 0
TFAP2C MCF7GSE21234 19212071 19212802 731 0
TFAP2C MCF7GSE21234 19219624 19220107 483 0
TFAP2C MCF7GSE21234 19245979 19246860 881 0
TFAP2C MCF7GSE21234 19325138 19325835 697 0
TFAP2C MCF7GSE21234 19356014 19356672 658 0
TFAP2C MCF7GSE21234 19385703 19386041 338 0
TFAP2C MCF7GSE21234 19557170 19557593 423 0
TFAP2C MCF7GSE21234 19641207 19641827 620 0
hScc1 BcellGSE12603 19141544 19141929 385 0
hScc1 BcellGSE12603 19476205 19476359 154 0
hScc1 BcellGSE12603 19512366 19512753 387 0
hScc1 BcellGSE12603 19582913 19583255 342 0
hScc1 BcellGSE12603 19583848 19584023 175 0
hScc1 BcellGSE12603 19590757 19591621 864 0
hScc1 BcellGSE12603 19621331 19622129 798 0
hScc1 CdLSGSE12603 19512366 19512929 563 0
hScc1 CdLSGSE12603 19590724 19591621 897 0
p130 QuiescentGSE19898 19468888 19469014 126 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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