AutismKB 2.0

Annotation Detail for SRGAP1


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Basic Information Top
Gene Symbol:SRGAP1 ( ARHGAP13,FLJ22166,KIAA1304 )
Gene Full Name: SLIT-ROBO Rho GTPase activating protein 1
Band: 12q14.2
Quick LinksEntrez ID:57522; OMIM: 606523; Uniprot ID:SRGP1_HUMAN; ENSEMBL ID: ENSG00000196935; HGNC ID: 17382
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
906Phosphoserine.
917Phosphoserine.
999Phosphoserine.
1001Phosphothreonine.
1004Phosphothreonine.
1005Phosphoserine.
1008Phosphoserine.
1010Phosphoserine.
1029Phosphoserine.
1032Phosphoserine.
Location(AA) Modifications Resource
906Phosphoserine.Swiss-Prot 53.0
906PhosphoserinePhospho.ELM 6.0
917Phosphoserine.Swiss-Prot 53.0
917PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
19Phosphoserine(ATM)HMM predict
81Phosphothreonine(PKA)HMM predict
87Phosphotyrosine(Syk)HMM predict
111Phosphoserine(PKG)HMM predict
214Phosphoserine(PKC)HMM predict
214Phosphoserine(PKG)HMM predict
251N-linkedHMM predict
368Phosphothreonine(PKC)HMM predict
380Phosphothreonine(PKA)HMM predict
396SulfotyrosineHMM predict
407Phosphoserine(CK1)HMM predict
410Phosphoserine(IKK)HMM predict
413O-linkedHMM predict
418O-linkedHMM predict
477Phosphothreonine(PKC)HMM predict
493PhosphoserineHMM predict
497Phosphoserine(IKK)HMM predict
497Phosphoserine(ATM)HMM predict
546Phosphoserine(IKK)HMM predict
642Phosphoserine(ATM)HMM predict
717Phosphoserine(CDC2)HMM predict
763PhosphoserineHMM predict
807Phosphoserine(CK1)HMM predict
811Phosphoserine(ATM)HMM predict
819O-linkedHMM predict
820Phosphoserine(ATM)HMM predict
824Phosphothreonine(PKC)HMM predict
860MethylarginineHMM predict
904N-linkedHMM predict
906Phosphoserine(CDC2)HMM predict
920N-linkedHMM predict
938Phosphoserine(PKA)HMM predict
939Phosphothreonine(PKA)HMM predict
940Phosphoserine(PKA)HMM predict
981Phosphothreonine(PKC)HMM predict
999Phosphoserine(CDC2)HMM predict
1001O-linkedHMM predict
1001Phosphothreonine(MAPK)HMM predict
1004O-linkedHMM predict
1010Phosphoserine(ATM)HMM predict
1020Phosphoserine(CK1)HMM predict
1028Phosphothreonine(PKA)HMM predict
1029Phosphoserine(PKA)HMM predict
1029Phosphoserine(CK2)HMM predict
1029Phosphoserine(IKK)HMM predict
1030O-linkedHMM predict
1031O-linkedHMM predict
1034O-linkedHMM predict
1066N-linkedHMM predict
1068O-linkedHMM predict
1078ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020762
  • Location:chr12 62524807-62823826
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 62523980 62524163 183 736
CTCF CD4SISSRdata 62523980 62524163 183 736
CTCF G2GSE9613 62519305 62519764 459 5273
CTCF G2GSE9613 62523663 62525123 1460 415
Myc K562GSE19551 62523796 62524207 411 806
hScc1 BcellGSE12603 62519380 62519764 384 5236
hScc1 BcellGSE12603 62523798 62524397 599 710
hScc1 CdLSGSE12603 62519305 62519764 459 5273
hScc1 CdLSGSE12603 62523697 62524429 732 745
hScc1 G2GSE9613 62519305 62519764 459 5273
hScc1 G2GSE9613 62523719 62525232 1513 332
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 62526010 62526710 700 0
CTCF G2GSE9613 62570638 62571295 657 0
CTCF G2GSE9613 62618044 62618331 287 0
CTCF G2GSE9613 62717042 62717313 271 0
ER E2-MCF7GSE14664 62751028 62751062 34 0
ER Fulvestrant-MCF7GSE14664 62562967 62563004 37 0
ER Fulvestrant-MCF7GSE14664 62751027 62751064 37 0
ER MCF7GSE19013 62698702 62699836 1134 0
FOXA1 DLD1GSE12801 62525760 62526379 619 0
FOXA1 DLD1GSE12801 62542306 62543117 811 0
FOXA1 DLD1GSE12801 62580923 62582217 1294 0
FOXA1 DLD1GSE12801 62589241 62589736 495 0
FOXA1 DLD1GSE12801 62597910 62598228 318 0
FOXA1 DLD1GSE12801 62598758 62599034 276 0
FOXA1 DLD1GSE12801 62719626 62720106 480 0
FOXA1 DLD1GSE12801 62760387 62761532 1145 0
FOXA1 MCF7GSE15244 62524660 62525158 498 0
FOXA1 MCF7GSE15244 62525906 62526776 870 0
FOXA1 MCF7GSE15244 62542306 62543044 738 0
FOXA1 MCF7GSE15244 62557890 62558213 323 0
FOXA1 MCF7GSE15244 62581192 62582040 848 0
FOXA1 MCF7GSE15244 62597945 62598228 283 0
FOXA1 MCF7GSE15244 62689958 62690697 739 0
FOXA1 MCF7GSE15244 62760318 62761163 845 0
FOXA1 MCF7GSE15244 62763167 62763561 394 0
FOXA1 MCF7GSE15244 62768736 62769003 267 0
Fos K562GSE19551 62768434 62768887 453 0
FoxA1 MCF7MACSdata 62525789 62526114 325 0
FoxA1 MCF7MACSdata 62581443 62581745 302 0
FoxA1 MCF7MACSdata 62760417 62761014 597 0
GATA3 MCF7GSE15244 62526195 62527054 859 0
GATA3 MCF7GSE15244 62557610 62558213 603 0
GATA3 MCF7GSE15244 62576362 62577244 882 0
GATA3 MCF7GSE15244 62601046 62601786 740 0
GATA3 MCF7GSE15244 62690028 62690662 634 0
GATA3 MCF7GSE15244 62698681 62700142 1461 0
GATA3 MCF7GSE15244 62768625 62769003 378 0
H3K4me2 HCT116GSE10453 62526088 62527054 966 0
H3K4me3 colorectalcancer 62525232 62525557 325 0
H3ac HepG2E 62524905 62525624 719 0
H3ac HepG2E 62525943 62527054 1111 0
Jun K562GSE19551 62768449 62768806 357 0
Oct1 H2O2-HelaGSE14283 62543013 62543052 39 0
Oct1 H2O2-HelaGSE14283 62549714 62549748 34 0
Oct1 H2O2-HelaGSE14283 62634500 62634556 56 0
Oct1 H2O2-HelaGSE14283 62674418 62674461 43 0
Oct1 H2O2-HelaGSE14283 62726554 62726581 27 0
Oct1 H2O2-HelaGSE14283 62745725 62745766 41 0
Oct1 H2O2-HelaGSE14283 62751029 62751065 36 0
Oct1 H2O2-HelaGSE14283 62766407 62766440 33 0
Oct1 HelaGSE14283 62543014 62543052 38 0
Oct1 HelaGSE14283 62549714 62549748 34 0
Oct1 HelaGSE14283 62634505 62634556 51 0
Oct1 HelaGSE14283 62674422 62674461 39 0
Oct1 HelaGSE14283 62751027 62751066 39 0
Oct1 HelaGSE14283 62766407 62766439 32 0
P300 T30-glioblastomaGSE21026 62541898 62542868 970 0
P300 T30-glioblastomaGSE21026 62768362 62769393 1031 0
RARA MCF7GSE15244 62524749 62525069 320 0
RARA MCF7GSE15244 62525943 62527054 1111 0
RARA MCF7GSE15244 62542306 62543282 976 0
RARA MCF7GSE15244 62549517 62549759 242 0
RARA MCF7GSE15244 62557574 62558213 639 0
RARA MCF7GSE15244 62581090 62582295 1205 0
RARA MCF7GSE15244 62597512 62598228 716 0
RARA MCF7GSE15244 62598758 62599034 276 0
RARA MCF7GSE15244 62600314 62601970 1656 0
RARA MCF7GSE15244 62689595 62690943 1348 0
RARA MCF7GSE15244 62698753 62699605 852 0
RARA MCF7GSE15244 62760318 62761532 1214 0
RARA MCF7GSE15244 62762819 62763732 913 0
RARA MCF7GSE15244 62768139 62769003 864 0
RARG MCF7GSE15244 62524660 62525269 609 0
RARG MCF7GSE15244 62526161 62527054 893 0
RARG MCF7GSE15244 62542306 62543282 976 0
RARG MCF7GSE15244 62557890 62558140 250 0
RARG MCF7GSE15244 62581120 62582295 1175 0
RARG MCF7GSE15244 62597734 62598228 494 0
RARG MCF7GSE15244 62598758 62599034 276 0
RARG MCF7GSE15244 62601046 62601786 740 0
RARG MCF7GSE15244 62689958 62690697 739 0
RARG MCF7GSE15244 62698889 62699570 681 0
RARG MCF7GSE15244 62760318 62761124 806 0
RARG MCF7GSE15244 62768698 62769003 305 0
RARG MCF7GSE15244 62823192 62823541 349 0
RNAII Tamoxifen-MCF7GSE14664 62751027 62751067 40 0
STAT1 HeLaGSE12782 62767659 62769657 1998 0
STAT1 HeLaGSE12783 62767693 62769649 1956 0
STAT1 IFNSISSRdata 62768051 62769639 1588 0
TAF HelaGSE8489 62768661 62769003 342 0
TFAP2C MCF7GSE21234 62542199 62542801 602 0
TFAP2C MCF7GSE21234 62585416 62586106 690 0
TFAP2C MCF7GSE21234 62800545 62801169 624 0
p130 QuiescentGSE19898 62569226 62569430 204 0
p63 keratinocytesGSE17611 62602200 62603128 928 0
p63 keratinocytesGSE17611 62784949 62785713 764 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6221 mRNA SRGAP1 chr12 62524807 62823827 136 EST chr12 62718608 62777665Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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