AutismKB 2.0

Annotation Detail for RGAG1


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Basic Information Top
Gene Symbol:RGAG1 ( KIAA1318,MAR9,MART9,MGC142230 )
Gene Full Name: retrotransposon gag domain containing 1
Band: Xq23
Quick LinksEntrez ID:57529; OMIM: NA; Uniprot ID:RGAG1_HUMAN; ENSEMBL ID: ENSG00000243978; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1248Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
11N-linkedHMM predict
12N-linkedHMM predict
53O-linkedHMM predict
54Phosphoserine(IKK)HMM predict
56O-linkedHMM predict
75Phosphoserine(IKK)HMM predict
84Phosphoserine(IKK)HMM predict
88Phosphoserine(ATM)HMM predict
97Phosphoserine(IKK)HMM predict
110Phosphoserine(IKK)HMM predict
127Phosphoserine(CDC2)HMM predict
127Phosphoserine(MAPK)HMM predict
135Phosphotyrosine(INSR)HMM predict
135Phosphotyrosine(SRC)HMM predict
173O-linkedHMM predict
187O-linkedHMM predict
191Phosphoserine(IKK)HMM predict
225O-linkedHMM predict
226O-linkedHMM predict
278O-linkedHMM predict
282O-linkedHMM predict
282Phosphoserine(CDC2)HMM predict
286O-linkedHMM predict
287O-linkedHMM predict
287Phosphoserine(IKK)HMM predict
291O-linkedHMM predict
313Phosphoserine(CK1)HMM predict
314Phosphoserine(CDC2)HMM predict
314Phosphoserine(CDK)HMM predict
314Phosphoserine(ATM)HMM predict
347Phosphoserine(IKK)HMM predict
369O-linkedHMM predict
395O-linkedHMM predict
434O-linkedHMM predict
440O-linkedHMM predict
443Phosphothreonine(PKC)HMM predict
494O-linkedHMM predict
499Phosphothreonine(MAPK)HMM predict
499Phosphothreonine(CDK)HMM predict
507O-linkedHMM predict
507O-linkedHMM predict
511O-linkedHMM predict
516O-linkedHMM predict
524Phosphoserine(IKK)HMM predict
537Phosphoserine(IKK)HMM predict
550Phosphoserine(IKK)HMM predict
572O-linkedHMM predict
577Phosphothreonine(MAPK)HMM predict
585O-linkedHMM predict
585Phosphoserine(IKK)HMM predict
589Phosphoserine(IKK)HMM predict
620Phosphothreonine(MAPK)HMM predict
650O-linkedHMM predict
650Phosphoserine(IKK)HMM predict
654Phosphoserine(IKK)HMM predict
680O-linkedHMM predict
680O-linkedHMM predict
680Phosphoserine(IKK)HMM predict
693Phosphoserine(IKK)HMM predict
720Phosphoserine(ATM)HMM predict
724Phosphoserine(IKK)HMM predict
751O-linkedHMM predict
755O-linkedHMM predict
755Phosphoserine(CK1)HMM predict
764O-linkedHMM predict
768Phosphoserine(IKK)HMM predict
788Phosphoserine(CK2)HMM predict
789Phosphoserine(PKG)HMM predict
794Phosphoserine(IKK)HMM predict
808Phosphothreonine(MAPK)HMM predict
815Phosphotyrosine(INSR)HMM predict
815Phosphotyrosine(SRC)HMM predict
846Phosphoserine(IKK)HMM predict
855Phosphoserine(CAMK2)HMM predict
859Phosphoserine(IKK)HMM predict
872Phosphoserine(IKK)HMM predict
874O-linkedHMM predict
894O-linkedHMM predict
894O-linkedHMM predict
899Phosphoserine(CDC2)HMM predict
907O-linkedHMM predict
907O-linkedHMM predict
907O-linkedHMM predict
912Phosphothreonine(MAPK)HMM predict
912Phosphothreonine(CDK)HMM predict
918Phosphoserine(PKA)HMM predict
918Phosphoserine(IKK)HMM predict
918Phosphoserine(PKB)HMM predict
918PhosphoserineHMM predict
931Phosphoserine(PKG)HMM predict
937O-linkedHMM predict
937O-linkedHMM predict
976Phosphoserine(IKK)HMM predict
989O-linkedHMM predict
993O-linkedHMM predict
994Phosphoserine(CAMK2)HMM predict
1002Phosphoserine(CK1)HMM predict
1002Phosphoserine(IKK)HMM predict
1002Phosphoserine(PKB)HMM predict
1004Phosphoserine(PKG)HMM predict
1004Phosphoserine(ATM)HMM predict
1035Phosphoserine(PKG)HMM predict
1039Phosphoserine(IKK)HMM predict
1050Phosphoserine(IKK)HMM predict
1070Phosphoserine(IKK)HMM predict
1070Phosphoserine(PKB)HMM predict
1081O-linkedHMM predict
1083Phosphoserine(IKK)HMM predict
1100O-linkedHMM predict
1102Phosphoserine(IKK)HMM predict
1111N-linkedHMM predict
1117Phosphoserine(IKK)HMM predict
1130O-linkedHMM predict
1163Phosphoserine(ATM)HMM predict
1226Phosphotyrosine(INSR)HMM predict
1317Phosphoserine(CDC2)HMM predict
1320N-linkedHMM predict
1343Phosphoserine(ATM)HMM predict
1347Phosphothreonine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020769
  • Location:chrX 109548940-109586216
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 109538010 109538332 322 10770
CTCF CD4GSE12889 109543107 109543332 225 5721
CTCF CD4SISSRdata 109538010 109538332 322 10770
CTCF CD4SISSRdata 109543107 109543332 225 5721
CTCF HelaGSE12889 109543135 109543364 229 5691
CTCF G2GSE9613 109537649 109538167 518 11033
CTCF G2GSE9613 109542823 109543686 863 5686
CTCF G2GSE9613 109546928 109547275 347 1839
CTCF G2GSE9613 109548141 109548482 341 629
ER MCF7GSE19013 109531769 109532278 509 16917
FOXA1 MCF7GSE15244 109547817 109548765 948 650
RARA MCF7GSE15244 109531945 109532724 779 16606
RARG MCF7GSE15244 109531789 109532611 822 16741
RNAII Tamoxifen-MCF7GSE14664 109534584 109534622 38 14338
TFAP2C MCF7GSE21234 109531875 109533017 1142 16495
TFAP2C MCF7GSE21234 109534639 109535189 550 14027
hScc1 BcellGSE12603 109542823 109543410 587 5824
hScc1 CdLSGSE12603 109537862 109538167 305 10926
hScc1 CdLSGSE12603 109542773 109543507 734 5801
hScc1 G2GSE9613 109537613 109538167 554 11051
hScc1 G2GSE9613 109542773 109543642 869 5733
hScc1 G2GSE9613 109548069 109548513 444 650
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 109586220 109586267 47 27
Oct1 HelaGSE14283 109586220 109586267 47 27
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 109580061 109580250 189 0
CTCF CD4SISSRdata 109580061 109580250 189 0
CTCF G2GSE9613 109550852 109551193 341 0
CTCF G2GSE9613 109572599 109572931 332 0
CTCF G2GSE9613 109579922 109580426 504 0
CTCF G2GSE9613 109581272 109581424 152 0
CTCF G2GSE9613 109582208 109583134 926 0
CTCF G2GSE9613 109583669 109583822 153 0
CTCF G2GSE9613 109585355 109585501 146 0
HIF1 HypoHepG2 109574324 109574573 249 0
Myc K562GSE19551 109579984 109580355 371 0
Oct1 H2O2-HelaGSE14283 109565010 109565038 28 0
Rb QuiescentGSE19898 109548830 109549134 304 0
USF1 HepG2E 109572339 109572931 592 0
hScc1 BcellGSE12603 109579957 109580286 329 0
hScc1 CdLSGSE12603 109580032 109580538 506 0
hScc1 G2GSE9613 109572556 109572741 185 0
hScc1 G2GSE9613 109579957 109580575 618 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
28019 mRNA RGAG1 chrX 109468429 109505706 21174 mRNA AMMECR1 chrX 109245782 109489603 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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