Annotation Detail for SEMA6A

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Basic Information Top

Gene Symbol:	SEMA6A ( HT018,KIAA1368,SEMA,SEMA6A1,SEMAQ,VIA )
Gene Full Name:	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Band:	5q23.1
Quick Links	Entrez ID:57556; OMIM: 605885; Uniprot ID:SEM6A_HUMAN; ENSEMBL ID: ENSG00000092421; HGNC ID: 10738
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	Hela	GSE12889	115939738	115939893	155	1418
CTCF	G2	GSE9613	115938372	115938727	355	152
CTCF	G2	GSE9613	115939390	115940190	800	1393
ER	Fulvestrant-MCF7	GSE14664	115957144	115957189	45	18769
H3K4me3	colorectal	cancer	115938727	115939531	804	732
LIN9	G0	GSE7516	115942869	115943081	212	4578
Oct1	Hela	GSE14283	115948304	115948345	41	9927
Oct1	Hela	GSE14283	115957145	115957190	45	18770
Oct1	Hela	GSE14283	115957276	115957304	28	18893
P300	T0-glioblastoma	GSE21026	115938208	115938682	474	48
P300	T30-glioblastoma	GSE21026	115938196	115938993	797	197
hScc1	Bcell	GSE12603	115939229	115940967	1738	1701
hScc1	CdLS	GSE12603	115938885	115940967	2082	1529
p63	keratinocytes	GSE17611	115938894	115939963	1069	1031

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	115794410	115794443	33	12724
ER	E2-MCF7	GSE14664	115805356	115805452	96	1747
ER	Fulvestrant-MCF7	GSE14664	115794411	115794446	35	12722
Nanog	hES	GSE18292	115801442	115802144	702	5358
Oct1	Hela	GSE14283	115794409	115794450	41	12721
RNAII	Tamoxifen-MCF7	GSE14664	115794409	115794448	39	12722
RNAII	Tamoxifen-MCF7	GSE14664	115794485	115794561	76	12628

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	115848335	115848500	165
CTCF	G2	GSE9613	115923385	115923554	169
CTCF	G2	GSE9613	115935855	115936447	592
CTCF	G2	GSE9613	115936743	115937776	1033
NRSF	Jurkat	SISSRdata	115809047	115809165	118
NRSF-mono	Jurkat	QuESTdata	115808908	115809173	265
Oct1	Hela	GSE14283	115835785	115835834	49
Oct1	Hela	GSE14283	115857326	115857370	44
P300	T30-glioblastoma	GSE21026	115817907	115819185	1278
RARA	MCF7	GSE15244	115866093	115867060	967
RARA	MCF7	GSE15244	115906974	115907649	675
RNAII	Tamoxifen-MCF7	GSE14664	115834646	115834683	37
RNAII	Tamoxifen-MCF7	GSE14664	115902646	115902736	90
Stat6	IL-4-hr4	GSE17850	115817651	115818149	498
TFAP2C	MCF7	GSE21234	115882125	115882404	279
hScc1	Bcell	GSE12603	115811071	115811360	289
hScc1	Bcell	GSE12603	115921333	115921617	284
hScc1	Bcell	GSE12603	115935715	115936447	732
hScc1	Bcell	GSE12603	115936898	115937259	361
hScc1	CdLS	GSE12603	115921333	115921651	318
p63	keratinocytes	GSE17611	115881827	115882688	861

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-141	hsa-mir-141	12	20420713
hsa-miR-141*	hsa-mir-141	12	20420713
hsa-miR-142-3p	hsa-mir-142	17	20420713
hsa-miR-149	hsa-mir-149	2	20420713
hsa-miR-149*	hsa-mir-149	2	20420713
hsa-miR-185	hsa-mir-185	22	20420713
hsa-miR-185*	hsa-mir-185	22	20420713
hsa-miR-200a*	hsa-mir-200a	1	20420713
hsa-miR-200c	hsa-mir-200c	12	20420713
hsa-miR-200c*	hsa-mir-200c	12	20420713
hsa-miR-21	hsa-mir-21	17	20420713
hsa-miR-21*	hsa-mir-21	17	20420713
hsa-miR-224	hsa-mir-224	X	20420713
hsa-miR-34a	hsa-mir-34a	1	20420713
hsa-miR-34a*	hsa-mir-34a	1	20420713

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
21355	EST		chr5	115811092	115813387	294	mRNA	SEMA6A	chr5	115807150	115938398	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018