AutismKB 2.0

Annotation Detail for ARRDC3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:ARRDC3 ( KIAA1376,TLIMP )
Gene Full Name: arrestin domain containing 3
Band: 5q14.3
Quick LinksEntrez ID:57561; OMIM: 612464; Uniprot ID:ARRD3_HUMAN; ENSEMBL ID: ENSG00000113369; HGNC ID: 29263
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
17N-linkedHMM predict
20N-linkedHMM predict
71Phosphotyrosine(INSR)HMM predict
74N-linkedHMM predict
121Phosphothreonine(MAPK)HMM predict
171Phosphoserine(MAPK)HMM predict
183S-palmitoylHMM predict
202Phosphotyrosine(INSR)HMM predict
203Phosphothreonine(MAPK)HMM predict
257Phosphoserine(CK1)HMM predict
276Phosphoserine(IKK)HMM predict
323Phosphoserine(PKB)HMM predict
323Phosphoserine(PKA)HMM predict
323Phosphoserine(IKK)HMM predict
323Phosphoserine(CK1)HMM predict
323Phosphoserine(CAMK2)HMM predict
325O-linkedHMM predict
326Phosphoserine(IKK)HMM predict
349Phosphotyrosine(Abl)HMM predict
394Phosphotyrosine(SRC)HMM predict
404Phosphoserine(PKA)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020801
  • Location:chr5 90700297-90714876
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 90714968 90715260 292 238
CTCF G2GSE9613 90716389 90716756 367 1696
H3K4me3 colorectalcancer 90715405 90715948 543 800
Oct1 HelaGSE14283 90732072 90732100 28 17210
PHF8 Hs68minusFBSGSE20725 90714350 90715714 1364 156
RARA MCF7GSE15244 90715224 90715774 550 623
TAF HelaGSE8489 90715224 90716060 836 766
TAF k562GSE8489 90715224 90716562 1338 1017
hScc1 BcellGSE12603 90714909 90715224 315 190
hScc1 BcellGSE12603 90716317 90716831 514 1698
hScc1 CdLSGSE12603 90716245 90717029 784 1761
hScc1 G2GSE9613 90716205 90716795 590 1624
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 90700221 90700250 29 62
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 90711541 90711861 320 0
H3K4me3 colorectalcancer 90712860 90714634 1774 0
H3ac HepG2E 90712830 90714693 1863 0
NRSF mAbJurkat 90714264 90714805 541 0
PHF8 293TGSE20725 90711500 90713223 1723 0
Pol2 GM12878GSE19551 90711437 90713947 2510 0
Pol2 GM12878GSE19551 90713992 90715667 1675 0
PolII HeLaGSE12783 90698609 90707510 8901 0
PolII HeLaGSE12783 90707517 90716635 9118 0
TAF HelaGSE8489 90711341 90711655 314 0
TAF HelaGSE8489 90712830 90714875 2045 0
TAF k562GSE8489 90710134 90711689 1555 0
TAF k562GSE8489 90712747 90714909 2162 0
USF1 HepG2E 90712747 90713805 1058 0
USF2 HepG2E 90713053 90713672 619 0
hScc1 BcellGSE12603 90711541 90711825 284 0
hScc1 CdLSGSE12603 90711399 90712038 639 0
hScc1 G2GSE9613 90711399 90711900 501 0
p130 QuiescentGSE19898 90714642 90714970 328 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-125b hsa-mir-125b-1 11 20306291
hsa-miR-125b-1* hsa-mir-125b-1 11 20306291
hsa-miR-646 hsa-mir-646 20 20306291
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21227 EST chr5 90711854 90754536 3023 mRNA ARRDC3 chr5 90700297 90714877 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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