AutismKB 2.0

Annotation Detail for COL20A1


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Basic Information Top
Gene Symbol:COL20A1 ( KIAA1510,bA261N11.4 )
Gene Full Name: collagen, type XX, alpha 1
Band: 20q13.33
Quick LinksEntrez ID:57642; OMIM: NA; Uniprot ID:COKA1_HUMAN; ENSEMBL ID: ENSG00000101203; HGNC ID: 14670
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
607N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
614N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
52Phosphoserine(CK1)HMM predict
77Phosphothreonine(MAPK)HMM predict
86Phosphoserine(CDC2)HMM predict
120Phosphoserine(CK1)HMM predict
131O-linkedHMM predict
137O-linkedHMM predict
137O-linkedHMM predict
137Phosphothreonine(MAPK)HMM predict
137Phosphothreonine(CDK)HMM predict
139O-linkedHMM predict
139Phosphoserine(MAPK)HMM predict
139O-linkedHMM predict
141O-linkedHMM predict
141O-linkedHMM predict
141O-linkedHMM predict
143O-linkedHMM predict
143Phosphoserine(CDC2)HMM predict
157O-linkedHMM predict
159Phosphoserine(ATM)HMM predict
164Phosphothreonine(MAPK)HMM predict
244Phosphoserine(CK1)HMM predict
244Phosphoserine(CK2)HMM predict
335Phosphoserine(CDC2)HMM predict
335Phosphoserine(MAPK)HMM predict
389Phosphoserine(IKK)HMM predict
393Phosphoserine(ATM)HMM predict
425Phosphothreonine(PKC)HMM predict
438Phosphothreonine(CDK)HMM predict
481Phosphothreonine(PKC)HMM predict
486Phosphothreonine(MAPK)HMM predict
511Phosphoserine(MAPK)HMM predict
606PhosphoserineHMM predict
614N-linkedHMM predict
624O-linkedHMM predict
626O-linkedHMM predict
630O-linkedHMM predict
650Phosphothreonine(PKC)HMM predict
650O-linkedHMM predict
651Phosphothreonine(PKC)HMM predict
656Phosphoserine(CDC2)HMM predict
658Phosphoserine(ATM)HMM predict
701Phosphoserine(CK1)HMM predict
749Phosphoserine(IKK)HMM predict
749Phosphoserine(ATM)HMM predict
749Phosphoserine(CDC2)HMM predict
767Phosphoserine(IKK)HMM predict
831O-linkedHMM predict
879O-linkedHMM predict
891Phosphothreonine(PKC)HMM predict
895Phosphoserine(PKA)HMM predict
895Phosphoserine(PKG)HMM predict
1008Phosphoserine(ATM)HMM predict
1029Phosphoserine(PKA)HMM predict
1030Phosphoserine(PKB)HMM predict
1069O-linkedHMM predict
1069Phosphoserine(IKK)HMM predict
1072O-linkedHMM predict
1075O-linkedHMM predict
1077Phosphothreonine(CDK)HMM predict
1093N-linkedHMM predict
1105MethylarginineHMM predict
1125Phosphoserine(IKK)HMM predict
1125O-linkedHMM predict
1143O-linkedHMM predict
1146O-linkedHMM predict
1173O-linkedHMM predict
1176MethylarginineHMM predict
1191MethylarginineHMM predict
1202Phosphothreonine(PKC)HMM predict
1203O-linkedHMM predict
1215O-linkedHMM predict
1215O-linkedHMM predict
1221O-linkedHMM predict
1227O-linkedHMM predict
1282Phosphoserine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020882
  • Location:chr20 61394982-61432727
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 61432255 61433247 992 24
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 61411417 61411569 152 0
CTCF CD4SISSRdata 61411417 61411569 152 0
CTCF HelaGSE12889 61411387 61411598 211 0
CTCF G2GSE9613 61396991 61397813 822 0
CTCF G2GSE9613 61410491 61411915 1424 0
GABP k562GSE8489 61428719 61429159 440 0
H3ac HepG2E 61405423 61406162 739 0
Rb GrowingGSE19898 61411363 61411596 233 0
TFAP2C MCF7GSE21234 61431992 61433212 1220 0
hScc1 BcellGSE12603 61399781 61400026 245 0
hScc1 BcellGSE12603 61405423 61406162 739 0
hScc1 BcellGSE12603 61409087 61409643 556 0
hScc1 BcellGSE12603 61410078 61410869 791 0
hScc1 BcellGSE12603 61411401 61411663 262 0
hScc1 BcellGSE12603 61413280 61413676 396 0
hScc1 BcellGSE12603 61415478 61416128 650 0
hScc1 BcellGSE12603 61416457 61416885 428 0
hScc1 BcellGSE12603 61417348 61417673 325 0
hScc1 BcellGSE12603 61418060 61418414 354 0
hScc1 BcellGSE12603 61419351 61420124 773 0
hScc1 BcellGSE12603 61420721 61421053 332 0
hScc1 BcellGSE12603 61424083 61424771 688 0
hScc1 BcellGSE12603 61427867 61428228 361 0
hScc1 BcellGSE12603 61430205 61431093 888 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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