AutismKB 2.0

Annotation Detail for TNRC6C


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Basic Information Top
Gene Symbol:TNRC6C ( FLJ20015,KIAA1582 )
Gene Full Name: trinucleotide repeat containing 6C
Band: 17q25.3
Quick LinksEntrez ID:57690; OMIM: 610741; Uniprot ID:TNR6C_HUMAN; ENSEMBL ID: ENSG00000078687; HGNC ID: 29318
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
714Phosphoserine.
1007Phosphoserine (By similarity).
Location(AA) Modifications Resource
Location(AA) Modification Resource
9N-linkedHMM predict
21N-linkedHMM predict
24N-linkedHMM predict
45N-linkedHMM predict
122N-linkedHMM predict
124O-linkedHMM predict
125Phosphoserine(IKK)HMM predict
128Phosphoserine(MAPK)HMM predict
143N-linkedHMM predict
165O-linkedHMM predict
167Phosphoserine(ATM)HMM predict
171Phosphoserine(IKK)HMM predict
185N-linkedHMM predict
186N-linkedHMM predict
188N-linkedHMM predict
191N-linkedHMM predict
193Phosphoserine(CDC2)HMM predict
195N-linkedHMM predict
229N-linkedHMM predict
234Phosphoserine(ATM)HMM predict
234Phosphoserine(IKK)HMM predict
252Phosphoserine(CDC2)HMM predict
282N-linkedHMM predict
365O-linkedHMM predict
367O-linkedHMM predict
372N-linkedHMM predict
374O-linkedHMM predict
393O-linkedHMM predict
394O-linkedHMM predict
399Phosphoserine(CK1)HMM predict
400Phosphoserine(ATM)HMM predict
452Phosphothreonine(CDC2)HMM predict
452Phosphothreonine(CDK)HMM predict
465Phosphoserine(CK2)HMM predict
474N-linkedHMM predict
484O-linkedHMM predict
499N-linkedHMM predict
502N-linkedHMM predict
543O-linkedHMM predict
544O-linkedHMM predict
548O-linkedHMM predict
604Phosphoserine(CK1)HMM predict
615N-linkedHMM predict
624N-linkedHMM predict
626Phosphoserine(CK1)HMM predict
631N-linkedHMM predict
643N-linkedHMM predict
646N-linkedHMM predict
675N-linkedHMM predict
678N-linkedHMM predict
739N-linkedHMM predict
743N-linkedHMM predict
755O-linkedHMM predict
755O-linkedHMM predict
756O-linkedHMM predict
759N-linkedHMM predict
760O-linkedHMM predict
769O-linkedHMM predict
770N-linkedHMM predict
800Phosphoserine(PKG)HMM predict
811Phosphoserine(CK1)HMM predict
822Phosphoserine(CDC2)HMM predict
829N-linkedHMM predict
887N-linkedHMM predict
909O-linkedHMM predict
909Phosphoserine(IKK)HMM predict
911Phosphoserine(CK2)HMM predict
912Phosphoserine(CK1)HMM predict
930PhosphothreonineHMM predict
1007O-linkedHMM predict
1011Phosphoserine(CK1)HMM predict
1029Phosphothreonine(MAPK)HMM predict
1031O-linkedHMM predict
1031Phosphoserine(CDC2)HMM predict
1036Phosphoserine(CDC2)HMM predict
1046Phosphoserine(IKK)HMM predict
1066N-linkedHMM predict
1102N-linkedHMM predict
1104Phosphoserine(ATM)HMM predict
1117Phosphoserine(CDC2)HMM predict
1117Phosphoserine(CDK)HMM predict
1141Phosphoserine(CDC2)HMM predict
1225O-linkedHMM predict
1240O-linkedHMM predict
1244Phosphothreonine(MAPK)HMM predict
1244Phosphothreonine(CDK)HMM predict
1257Phosphoserine(IKK)HMM predict
1314Phosphoserine(CDC2)HMM predict
1314Phosphoserine(MAPK)HMM predict
1314Phosphoserine(IKK)HMM predict
1319N-linkedHMM predict
1355Phosphoserine(CDC2)HMM predict
1355Phosphoserine(ATM)HMM predict
1358O-linkedHMM predict
1358Phosphoserine(CDC2)HMM predict
1358Phosphoserine(MAPK)HMM predict
1358Phosphoserine(ATM)HMM predict
1372Phosphoserine(PKB)HMM predict
1379N-linkedHMM predict
1384N-linkedHMM predict
1410O-linkedHMM predict
1410Phosphothreonine(CDC2)HMM predict
1410Phosphothreonine(MAPK)HMM predict
1413O-linkedHMM predict
1421N-linkedHMM predict
1447O-linkedHMM predict
1451O-linkedHMM predict
1451O-linkedHMM predict
1467N-linkedHMM predict
1505Phosphoserine(IKK)HMM predict
1506O-linkedHMM predict
1520N-linkedHMM predict
1546N-linkedHMM predict
1551N-linkedHMM predict
1576N-linkedHMM predict
1603O-linkedHMM predict
1603O-linkedHMM predict
1608O-linkedHMM predict
1608O-linkedHMM predict
1612Phosphoserine(CK1)HMM predict
1612Phosphoserine(ATM)HMM predict
1672O-linkedHMM predict
1672Phosphoserine(CDC2)HMM predict
1674Phosphothreonine(MAPK)HMM predict
1674Phosphothreonine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018996
  • Location:chr17 73556588-73612615
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 73548612 73548852 240 7857
CTCF CD4SISSRdata 73548612 73548852 240 7857
CTCF G2GSE9613 73548514 73548923 409 7870
Gata2 K562GSE18868 73537341 73537910 569 18963
Myc K562GSE19551 73537379 73537727 348 19036
Oct1 HelaGSE14283 73543918 73543959 41 12650
P300 T30-glioblastomaGSE21026 73537955 73538667 712 18278
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 73592738 73593023 285 0
CTCF CD4SISSRdata 73592738 73593023 285 0
CTCF HelaGSE12889 73592566 73593113 547 0
CTCF G2GSE9613 73592607 73592897 290 0
CTCF G2GSE9613 73594536 73594870 334 0
Oct1 H2O2-HelaGSE14283 73571782 73571811 29 0
Oct1 HelaGSE14283 73610911 73610947 36 0
hScc1 BcellGSE12603 73592607 73593019 412 0
hScc1 CdLSGSE12603 73592607 73593289 682 0
hScc1 G2GSE9613 73592607 73592934 327 0
p63 keratinocytesGSE17611 73590612 73591308 696 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 19838187
hsa-let-7a hsa-let-7a-2 11 19838187
hsa-let-7a hsa-let-7a-3 22 19838187
hsa-let-7a* hsa-let-7a-1 9 19838187
hsa-let-7a* hsa-let-7a-3 22 19838187
hsa-let-7b hsa-let-7b 22 19838187
hsa-let-7b* hsa-let-7b 22 19838187
hsa-let-7c hsa-let-7c 21 19838187
hsa-let-7c* hsa-let-7c 21 19838187
hsa-let-7d hsa-let-7d 9 19838187
hsa-let-7d* hsa-let-7d 9 19838187
hsa-let-7e hsa-let-7e 19 19838187
hsa-let-7e* hsa-let-7e 19 19838187
hsa-let-7f hsa-let-7f-1 9 19838187
hsa-let-7f hsa-let-7f-2 X 19838187
hsa-let-7f-1* hsa-let-7f-1 9 19838187
hsa-let-7f-2* hsa-let-7f-2 X 19838187
hsa-let-7g hsa-let-7g 3 19838187
hsa-let-7g* hsa-let-7g 3 19838187
hsa-let-7i hsa-let-7i 12 19838187
hsa-let-7i* hsa-let-7i 12 19838187
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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