AutismKB 2.0

Annotation Detail for ZFYVE28


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Basic Information Top
Gene Symbol:ZFYVE28 ( LYST2,MGC43699,MGC61592 )
Gene Full Name: zinc finger, FYVE domain containing 28
Band: 4p16.3
Quick LinksEntrez ID:57732; OMIM: NA; Uniprot ID:LST2_HUMAN; ENSEMBL ID: ENSG00000159733; HGNC ID: 29334
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
586Phosphoserine; by MAP2K.
870Phosphothreonine; by MAP2K.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020972
  • Location:chr4 2241122-2390166
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 2390939 2391107 168 857
CTCF G2GSE9613 2394629 2395610 981 4953
CTCF G2GSE9613 2395998 2396346 348 6006
CTCF G2GSE9613 2396945 2397999 1054 7306
CTCF G2GSE9613 2398641 2400265 1624 9287
CTCF G2GSE9613 2401463 2402106 643 11618
CTCF G2GSE9613 2404236 2405616 1380 14760
CTCF G2GSE9613 2408596 2409165 569 18714
ER MCF7GSE19013 2390710 2391699 989 1038
ER MCF7GSE19013 2399772 2400373 601 9906
ETS1 JurkatGSE17954 2389941 2391114 1173 361
Fos K562GSE19551 2404544 2405083 539 14647
Myc hESGSE17917 2390240 2390456 216 182
P300 T30-glioblastomaGSE21026 2390023 2390746 723 218
RARA MCF7GSE15244 2401426 2402106 680 11600
USF1 HepG2E 2391219 2392119 900 1503
USF2 HepG2E 2401536 2402106 570 11655
hScc1 BcellGSE12603 2389952 2391071 1119 345
hScc1 BcellGSE12603 2397143 2397882 739 7346
hScc1 BcellGSE12603 2398603 2400265 1662 9268
hScc1 BcellGSE12603 2407385 2407740 355 17396
p130 shRbSenescentGSE19898 2390911 2391095 184 837
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 2236899 2237911 1012 3718
CTCF G2GSE9613 2239083 2239870 787 1646
CTCF G2GSE9613 2240376 2241050 674 410
Rb SenescentGSE19898 2237452 2237627 175 3583
hScc1 BcellGSE12603 2237016 2237911 895 3659
hScc1 BcellGSE12603 2239120 2240033 913 1546
hScc1 BcellGSE12603 2240376 2240939 563 465
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 2301523 2301949 426 0
CBP T30-glioblastomaGSE21026 2301375 2302150 775 0
CTCF CD4GSE12889 2325746 2325972 226 0
CTCF CD4GSE12889 2373622 2373781 159 0
CTCF CD4SISSRdata 2325746 2325972 226 0
CTCF CD4SISSRdata 2373622 2373781 159 0
CTCF G2GSE9613 2241970 2243157 1187 0
CTCF G2GSE9613 2243600 2243888 288 0
CTCF G2GSE9613 2244458 2246039 1581 0
CTCF G2GSE9613 2247317 2247815 498 0
CTCF G2GSE9613 2252164 2252829 665 0
CTCF G2GSE9613 2253249 2253671 422 0
CTCF G2GSE9613 2255489 2256291 802 0
CTCF G2GSE9613 2256913 2257336 423 0
CTCF G2GSE9613 2259838 2260097 259 0
CTCF G2GSE9613 2260834 2262252 1418 0
CTCF G2GSE9613 2262548 2263787 1239 0
CTCF G2GSE9613 2267008 2267931 923 0
CTCF G2GSE9613 2268472 2270866 2394 0
CTCF G2GSE9613 2271948 2272858 910 0
CTCF G2GSE9613 2274462 2274958 496 0
CTCF G2GSE9613 2275209 2277085 1876 0
CTCF G2GSE9613 2290453 2290910 457 0
CTCF G2GSE9613 2291222 2291774 552 0
CTCF G2GSE9613 2292325 2292720 395 0
CTCF G2GSE9613 2293086 2294066 980 0
CTCF G2GSE9613 2301864 2305382 3518 0
CTCF G2GSE9613 2306038 2306682 644 0
CTCF G2GSE9613 2307060 2307238 178 0
CTCF G2GSE9613 2308602 2309024 422 0
CTCF G2GSE9613 2309418 2309787 369 0
CTCF G2GSE9613 2311486 2311664 178 0
CTCF G2GSE9613 2311996 2312359 363 0
CTCF G2GSE9613 2323714 2325507 1793 0
CTCF G2GSE9613 2325755 2325941 186 0
CTCF G2GSE9613 2327631 2327934 303 0
CTCF G2GSE9613 2328737 2329562 825 0
CTCF G2GSE9613 2332811 2334686 1875 0
CTCF G2GSE9613 2335523 2337512 1989 0
CTCF G2GSE9613 2337958 2338318 360 0
CTCF G2GSE9613 2339391 2339527 136 0
CTCF G2GSE9613 2341743 2342673 930 0
CTCF G2GSE9613 2343290 2343569 279 0
CTCF G2GSE9613 2344329 2344684 355 0
CTCF G2GSE9613 2345252 2345574 322 0
CTCF G2GSE9613 2346984 2347312 328 0
CTCF G2GSE9613 2350141 2350307 166 0
CTCF G2GSE9613 2355449 2356243 794 0
CTCF G2GSE9613 2356593 2357271 678 0
CTCF G2GSE9613 2358337 2359567 1230 0
CTCF G2GSE9613 2360165 2360997 832 0
CTCF G2GSE9613 2362659 2362948 289 0
CTCF G2GSE9613 2367045 2368380 1335 0
CTCF G2GSE9613 2369400 2369811 411 0
CTCF G2GSE9613 2371326 2372014 688 0
CTCF G2GSE9613 2372486 2374560 2074 0
CTCF G2GSE9613 2376868 2377248 380 0
CTCF G2GSE9613 2378891 2379078 187 0
CTCF G2GSE9613 2380082 2381343 1261 0
CTCF G2GSE9613 2383253 2384060 807 0
CTCF G2GSE9613 2384349 2385590 1241 0
CTCF G2GSE9613 2387944 2390412 2468 0
Gata1 K562GSE18868 2366963 2367567 604 0
Gata2 K562GSE18868 2366956 2367601 645 0
P300 T0-glioblastomaGSE21026 2301392 2302018 626 0
P300 T30-glioblastomaGSE21026 2301384 2302290 906 0
Rb shRbSenescenceGSE19898 2385112 2385315 203 0
STAT1 HeLaGSE12783 2383306 2386332 3026 0
TFAP2C MCF7GSE21234 2304825 2305388 563 0
TFAP2C MCF7GSE21234 2335395 2335750 355 0
TFAP2C MCF7GSE21234 2356830 2357352 522 0
hScc1 BcellGSE12603 2241893 2242606 713 0
hScc1 BcellGSE12603 2243565 2243932 367 0
hScc1 BcellGSE12603 2247317 2247679 362 0
hScc1 BcellGSE12603 2253385 2253671 286 0
hScc1 BcellGSE12603 2256913 2257789 876 0
hScc1 BcellGSE12603 2260834 2261044 210 0
hScc1 BcellGSE12603 2269320 2269698 378 0
hScc1 BcellGSE12603 2274605 2274958 353 0
hScc1 BcellGSE12603 2275365 2276610 1245 0
hScc1 BcellGSE12603 2291179 2291842 663 0
hScc1 BcellGSE12603 2292186 2292471 285 0
hScc1 BcellGSE12603 2303753 2305135 1382 0
hScc1 BcellGSE12603 2305418 2306113 695 0
hScc1 BcellGSE12603 2309418 2309627 209 0
hScc1 BcellGSE12603 2311380 2311881 501 0
hScc1 BcellGSE12603 2327419 2327934 515 0
hScc1 BcellGSE12603 2329025 2329515 490 0
hScc1 BcellGSE12603 2333388 2334380 992 0
hScc1 BcellGSE12603 2335557 2336460 903 0
hScc1 BcellGSE12603 2339230 2339527 297 0
hScc1 BcellGSE12603 2358369 2358872 503 0
hScc1 BcellGSE12603 2364757 2365333 576 0
hScc1 BcellGSE12603 2371032 2371558 526 0
hScc1 BcellGSE12603 2373034 2374222 1188 0
hScc1 BcellGSE12603 2378891 2379078 187 0
hScc1 BcellGSE12603 2380814 2381189 375 0
hScc1 BcellGSE12603 2384476 2385310 834 0
hScc1 BcellGSE12603 2388170 2389017 847 0
hScc1 G2GSE9613 2303100 2303365 265 0
hScc1 G2GSE9613 2367576 2368596 1020 0
hScc1 G2GSE9613 2388060 2390153 2093 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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