AutismKB 2.0

Annotation Detail for RAB40C


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RAB40C ( RARL,RASL8C )
Gene Full Name: RAB40C, member RAS oncogene family
Band: 16p13.3
Quick LinksEntrez ID:57799; OMIM: NA; Uniprot ID:RB40C_HUMAN; ENSEMBL ID: ENSG00000197562; HGNC ID: 18285
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
6Phosphoserine(CDC2)HMM predict
6Phosphoserine(CDK)HMM predict
6Phosphoserine(IKK)HMM predict
242Phosphoserine(IKK)HMM predict
268Phosphoserine(ATM)HMM predict
272N-linkedHMM predict
273S-farnesylHMM predict
278S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021168
  • Location:chr16 580179-619271
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 578302 579378 1076 1340
ER MCF7GSE19013 577938 578542 604 1940
hScc1 BcellGSE12603 578781 579665 884 957
p130 shRbQuiescentGSE19898 579686 580152 466 261
p130 shRbSenescentGSE19898 579548 580083 535 364
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 619517 620575 1058 775
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 616570 617299 729 0
CTCF CD4GSE12889 601101 601416 315 0
CTCF CD4SISSRdata 601101 601416 315 0
CTCF HelaGSE12889 601199 601390 191 0
CTCF JurkatGSE12889 601233 601394 161 0
CTCF G2GSE9613 580309 581287 978 0
CTCF G2GSE9613 583883 584107 224 0
CTCF G2GSE9613 589182 589494 312 0
CTCF G2GSE9613 596263 596476 213 0
CTCF G2GSE9613 599388 599598 210 0
CTCF G2GSE9613 602139 602534 395 0
CTCF G2GSE9613 603097 603405 308 0
CTCF G2GSE9613 608363 609156 793 0
CTCF G2GSE9613 611260 611445 185 0
CTCF G2GSE9613 612340 612481 141 0
CTCF G2GSE9613 615151 615467 316 0
CTCF G2GSE9613 616060 616352 292 0
CTCF G2GSE9613 618510 618950 440 0
FOXA1 MCF7GSE15244 580689 581550 861 0
FOXA1 MCF7GSE15244 583065 584107 1042 0
FOXA1 MCF7GSE15244 589218 590198 980 0
FOXA1 MCF7GSE15244 603997 605010 1013 0
Fos K562GSE19551 616836 617289 453 0
GABP k562GSE8489 580630 581550 920 0
H3K4me2 HCT116GSE10453 580724 581485 761 0
H3K4me3 colorectalcancer 580630 581550 920 0
H3ac HepG2E 580591 581550 959 0
NRSF pAbJurkat 603729 604904 1175 0
P300 T30-glioblastomaGSE21026 616218 617495 1277 0
RARA MCF7GSE15244 583029 584029 1000 0
RARA MCF7GSE15244 594277 594619 342 0
TAF HelaGSE8489 580660 581520 860 0
TAF HelaGSE8489 603514 604183 669 0
TFAP2C MCF7GSE21234 582507 584173 1666 0
TFAP2C MCF7GSE21234 613812 614402 590 0
hScc1 BcellGSE12603 580309 580689 380 0
hScc1 BcellGSE12603 589182 590089 907 0
hScc1 BcellGSE12603 601483 603514 2031 0
hScc1 BcellGSE12603 611201 611601 400 0
hScc1 CdLSGSE12603 580309 580591 282 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 21349817
hsa-let-7a hsa-let-7a-2 11 21349817
hsa-let-7a hsa-let-7a-3 22 21349817
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved