AutismKB 2.0

Annotation Detail for PTPN9


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Basic Information Top
Gene Symbol:PTPN9 ( MEG2,PTPMEG2 )
Gene Full Name: protein tyrosine phosphatase, non-receptor type 9
Band: 15q24.2
Quick LinksEntrez ID:5780; OMIM: 600768; Uniprot ID:PTN9_HUMAN; ENSEMBL ID: ENSG00000169410; HGNC ID: 9661
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
16Phosphothreonine(MAPK)HMM predict
16PhosphothreonineHMM predict
38N-linkedHMM predict
71Phosphothreonine(PKC)HMM predict
238Phosphotyrosine(INSR)HMM predict
307Phosphotyrosine(Syk)HMM predict
333Phosphotyrosine(Syk)HMM predict
333Phosphotyrosine(EGFR)HMM predict
347Phosphothreonine(PKC)HMM predict
357Phosphotyrosine(INSR)HMM predict
471Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002833
  • Location:chr15 73546515-73658679
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 73540278 73540696 418 6029
Oct4 hESGSE17917 73541145 73541384 239 5251
Oct4 hESGSE21916 73541144 73541565 421 5161
Sox2 hESGSE18292 73541132 73541387 255 5256
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 73588339 73588656 317 0
CTCF CD4SISSRdata 73588339 73588656 317 0
CTCF G2GSE9613 73548463 73548764 301 0
CTCF G2GSE9613 73559850 73560109 259 0
CTCF G2GSE9613 73658364 73658995 631 0
Fos K562GSE19551 73595976 73596160 184 0
H3K4me3 colorectalcancer 73559850 73560109 259 0
H3K4me3 colorectalcancer 73656710 73658013 1303 0
H3ac HepG2E 73657041 73657760 719 0
Myc K562GSE19551 73588397 73588607 210 0
Myc K562GSE19551 73602359 73602748 389 0
Oct1 H2O2-HelaGSE14283 73587298 73587336 38 0
Oct1 HelaGSE14283 73587297 73587336 39 0
Oct1 HelaGSE14283 73644318 73644360 42 0
P300 T30-glioblastomaGSE21026 73595673 73596437 764 0
Rb GrowingGSE19898 73606406 73606605 199 0
hScc1 BcellGSE12603 73559894 73560109 215 0
hScc1 BcellGSE12603 73657820 73658948 1128 0
p130 QuiescentGSE19898 73611936 73612160 224 0
p130 shRbSenescentGSE19898 73657612 73657916 304 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9088 mRNA chr15 73548761 73554715 359 mRNA PTPN9 chr15 73546514 73658680Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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