AutismKB 2.0

Annotation Detail for CADM3


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Basic Information Top
Gene Symbol:CADM3 ( BIgR,FLJ10698,IGSF4B,NECL1,Necl-1,TSLL1,synCAM3 )
Gene Full Name: cell adhesion molecule 3
Band: 1q23.2
Quick LinksEntrez ID:57863; OMIM: 609743; Uniprot ID:CADM3_HUMAN; ENSEMBL ID: ENSG00000162706; HGNC ID: 17601
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
290N-linked (GlcNAc...).
Location(AA) Modifications Resource
25N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
17S-palmitoylHMM predict
18S-palmitoylHMM predict
25N-linkedHMM predict
27Phosphoserine(ATM)HMM predict
31Phosphoserine(IKK)HMM predict
31Phosphoserine(ATM)HMM predict
58Phosphoserine(CK1)HMM predict
59Phosphoserine(CK1)HMM predict
63Phosphoserine(IKK)HMM predict
94Phosphoserine(CK1)HMM predict
108Phosphotyrosine(INSR)HMM predict
157Phosphoserine(CK1)HMM predict
164Phosphothreonine(PKC)HMM predict
191O-linkedHMM predict
224Phosphoserine(ATM)HMM predict
290N-linkedHMM predict
297Phosphotyrosine(INSR)HMM predict
320PhosphoserineHMM predict
320Phosphoserine(CDK)HMM predict
324O-linkedHMM predict
326O-linkedHMM predict
327Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021189
  • Location:chr1 157408043-157438424
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 157397354 157397709 355 10512
CTCF CD4SISSRdata 157397354 157397709 355 10512
CTCF HelaGSE12889 157397459 157397769 310 10430
CTCF G2GSE9613 157397267 157398142 875 10339
H3K27me3 colorectalcancer 157406831 157407496 665 880
Myc K562GSE19551 157397409 157397691 282 10494
NRSF mAbJurkat 157404765 157407534 2769 1894
Oct1 HelaGSE14283 157405861 157405893 32 2167
TAFII hESGSE17917 157397494 157397726 232 10434
hScc1 BcellGSE12603 157397267 157398039 772 10391
hScc1 BcellGSE12603 157407812 157408008 196 134
hScc1 CdLSGSE12603 157397267 157398039 772 10391
hScc1 G2GSE9613 157397267 157398039 772 10391
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 157413645 157414148 503 0
CBP T30-glioblastomaGSE21026 157413662 157414074 412 0
CTCF CD4GSE12889 157434497 157434712 215 0
CTCF CD4SISSRdata 157434497 157434712 215 0
CTCF G2GSE9613 157409594 157409884 290 0
CTCF G2GSE9613 157424776 157425046 270 0
CTCF G2GSE9613 157433068 157433258 190 0
CTCF G2GSE9613 157434144 157435091 947 0
CTCF G2GSE9613 157436137 157436365 228 0
H3K27me3 colorectalcancer 157408823 157409334 511 0
KLF4 hESGSE17917 157409495 157409696 201 0
NRSF JurkatGSE13047 157413328 157414588 1260 0
NRSF mAbJurkat 157409976 157414304 4328 0
NRSF mAbJurkat 157414681 157422759 8078 0
NRSF-mono JurkatQuESTdata 157411377 157411706 329 0
NRSF-mono JurkatQuESTdata 157413468 157414587 1119 0
NRSF-mono JurkatQuESTdata 157417783 157418019 236 0
NRSF-poly JurkatQuESTdata 157411401 157411673 272 0
NRSF-poly JurkatQuESTdata 157413314 157414491 1177 0
NRSF-poly JurkatQuESTdata 157415064 157415548 484 0
Nanog hESGSE18292 157413710 157413969 259 0
Oct1 HelaGSE14283 157417235 157417284 49 0
STAT1 IFNSISSRdata 157434213 157434917 704 0
Sox2 hESGSE18292 157413706 157413961 255 0
hScc1 BcellGSE12603 157434296 157434730 434 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1776 mRNA IGSF4B chr1 155954492 155984874 1054 mRNA chr1 155979701 155985267Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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