AutismKB 2.0

Annotation Detail for PTPRC


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Basic Information Top
Gene Symbol:PTPRC ( B220,CD45,CD45R,GP180,LCA,LY5,T200 )
Gene Full Name: protein tyrosine phosphatase, receptor type, C
Band: 1q31.3-q32.1
Quick LinksEntrez ID:5788; OMIM: 151460; Uniprot ID:PTPRC_HUMAN; ENSEMBL ID: ENSG00000081237; HGNC ID: 9666
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
78N-linked (GlcNAc...) (Potential).
90N-linked (GlcNAc...) (Potential).
95N-linked (GlcNAc...) (Potential).
184N-linked (GlcNAc...) (Potential).
190N-linked (GlcNAc...) (Potential).
197N-linked (GlcNAc...) (Potential).
232N-linked (GlcNAc...).
240N-linked (GlcNAc...).
260N-linked (GlcNAc...) (Potential).
270N-linked (GlcNAc...) (Potential).
276N-linked (GlcNAc...).
284N-linked (GlcNAc...).
335N-linked (GlcNAc...).
378N-linked (GlcNAc...) (Potential).
419N-linked (GlcNAc...).
468N-linked (GlcNAc...) (Potential).
488N-linked (GlcNAc...).
497N-linked (GlcNAc...).
529N-linked (GlcNAc...) (Potential).
951Phosphoserine (By similarity).
973Phosphoserine.
995Phosphoserine.
1003Phosphoserine.
1007Phosphoserine.
1297Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002838
  • Location:chr1 196874759-196993167
  • strand:+
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 197007430 197007642 212 14369
CTCF CD4SISSRdata 197007430 197007642 212 14369
P300 T30-glioblastomaGSE21026 197011943 197012889 946 19249
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 196935175 196935474 299 0
ER E2-MCF7GSE14664 196940739 196940782 43 0
ER E2-MCF7GSE14664 196941467 196941507 40 0
ER Fulvestrant-MCF7GSE14664 196940744 196940783 39 0
Nanog ESGSE20650 196977592 196977940 348 0
Oct1 H2O2-HelaGSE14283 196940738 196940780 42 0
Oct1 HelaGSE14283 196940732 196940778 46 0
Oct1 HelaGSE14283 196941465 196941512 47 0
Oct1 HelaGSE14283 196985158 196985208 50 0
RNAII Tamoxifen-MCF7GSE14664 196979951 196980013 62 0
SRF HelaGSE8489 196960910 196961305 395 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-124 hsa-mir-124-1 8 21131957
hsa-miR-124 hsa-mir-124-2 8 21131957
hsa-miR-124 hsa-mir-124-3 20 21131957
hsa-miR-130a hsa-mir-130a 11 21067317
hsa-miR-130a* hsa-mir-130a 11 21067317
hsa-miR-15a hsa-mir-15a 13 17351108
hsa-miR-15a* hsa-mir-15a 13 17351108
hsa-miR-16 hsa-mir-16-1 13 17351108
hsa-miR-16 hsa-mir-16-2 3 17351108
hsa-miR-16-1* hsa-mir-16-1 13 17351108
hsa-miR-17 hsa-mir-17 13 21067317
hsa-miR-17* hsa-mir-17 13 21067317
hsa-miR-223 hsa-mir-223 X 19915717
hsa-miR-223* hsa-mir-223 X 19915717
hsa-miR-92a hsa-mir-92a-1 13 21067317
hsa-miR-92a hsa-mir-92a-2 X 21067317
hsa-miR-98 hsa-mir-98 X 19915717
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
2118 mRNA PTPRC chr1 195339881 195393989 9509 EST chr1 195358338 195367847 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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