Annotation Detail for PTPRD
Basic Information
TopGene Symbol: | PTPRD ( HPTP,HPTPD,HPTPDELTA,MGC119750,MGC119751,MGC119752,MGC119753,PTPD,RPTPDELTA ) |
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Gene Full Name: | protein tyrosine phosphatase, receptor type, D |
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Band: | 9p24.1-p23 |
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Quick Links | Entrez ID:5789; OMIM: 601598; Uniprot ID:PTPRD_HUMAN; ENSEMBL ID: ENSG00000153707; HGNC ID: 9668 |
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Relate to Another Database: |
SFARIGene;
denovo-db |
Location(AA) |
Modification |
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254 | N-linked (GlcNAc...) (Potential). |
299 | N-linked (GlcNAc...) (Potential). |
724 | N-linked (GlcNAc...) (Potential). |
832 | N-linked (GlcNAc...) (Potential). |
Location(AA) |
Modifications |
Resource |
254 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
299 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
724 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
832 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
- RefSeq ID: NM_001040712
- Location:chr9 8304246-10602508
- strand:-
Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
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TAF |
k562 | GSE8489 | 8288459 |
8289067 |
608 |
15484 |
Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
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CBP |
T0-glioblastoma | GSE21026 | 9940408 |
9940931 |
523 |
0 |
CTCF |
CD4 | GSE12889 | 9780335 |
9780525 |
190 |
0 |
CTCF |
CD4 | GSE12889 | 9932912 |
9933112 |
200 |
0 |
CTCF |
CD4 | SISSRdata | 9780335 |
9780525 |
190 |
0 |
CTCF |
CD4 | SISSRdata | 9932912 |
9933112 |
200 |
0 |
CTCF |
Jurkat | GSE12889 | 10009209 |
10009299 |
90 |
0 |
CTCF |
Jurkat | GSE12889 | 10469316 |
10469461 |
145 |
0 |
ER |
E2-MCF7 | GSE14664 | 8655217 |
8655265 |
48 |
0 |
ER |
E2-MCF7 | GSE14664 | 8713522 |
8713604 |
82 |
0 |
ER |
E2-MCF7 | GSE14664 | 8932303 |
8932394 |
91 |
0 |
ER |
E2-MCF7 | GSE14664 | 9235786 |
9235826 |
40 |
0 |
ER |
E2-MCF7 | GSE14664 | 9613236 |
9613271 |
35 |
0 |
ER |
E2-MCF7 | GSE14664 | 9636214 |
9636303 |
89 |
0 |
ER |
E2-MCF7 | GSE14664 | 9764219 |
9764251 |
32 |
0 |
ER |
Fulvestrant-MCF7 | GSE14664 | 8655220 |
8655265 |
45 |
0 |
ER |
Fulvestrant-MCF7 | GSE14664 | 8932306 |
8932396 |
90 |
0 |
ER |
Fulvestrant-MCF7 | GSE14664 | 9235785 |
9235826 |
41 |
0 |
ER |
MCF7 | GSE19013 | 9671344 |
9671783 |
439 |
0 |
KLF4 |
hES | GSE17917 | 8991892 |
8992061 |
169 |
0 |
KLF4 |
hES | GSE17917 | 8992757 |
8992919 |
162 |
0 |
NRSF |
Jurkat | GSE13047 | 9081329 |
9081962 |
633 |
0 |
NRSF |
Jurkat | GSE13047 | 9176155 |
9176559 |
404 |
0 |
NRSF |
Jurkat | SISSRdata | 9081502 |
9081883 |
381 |
0 |
NRSF |
mAb | Jurkat | 9080434 |
9080898 |
464 |
0 |
NRSF |
mAb | Jurkat | 9081324 |
9082784 |
1460 |
0 |
NRSF |
mAb | Jurkat | 9755365 |
9755628 |
263 |
0 |
NRSF-mono |
Jurkat | QuESTdata | 9081383 |
9081882 |
499 |
0 |
NRSF-mono |
Jurkat | QuESTdata | 9176154 |
9176470 |
316 |
0 |
NRSF-poly |
Jurkat | QuESTdata | 9081384 |
9082031 |
647 |
0 |
NRSF-poly |
Jurkat | QuESTdata | 9176189 |
9176570 |
381 |
0 |
Nanog |
ES | GSE20650 | 10329077 |
10329673 |
596 |
0 |
Nanog |
ES | GSE20650 | 10377404 |
10377647 |
243 |
0 |
Nanog |
ES | GSE20650 | 10436609 |
10436932 |
323 |
0 |
Nanog |
ES | GSE20650 | 8832836 |
8833179 |
343 |
0 |
Nanog |
ES | GSE20650 | 8841041 |
8841227 |
186 |
0 |
Nanog |
ES | GSE20650 | 9331136 |
9331624 |
488 |
0 |
Nanog |
ES | GSE20650 | 9546959 |
9547540 |
581 |
0 |
Nanog |
hES | GSE18292 | 10124431 |
10124736 |
305 |
0 |
Nanog |
hES | GSE18292 | 10356279 |
10356726 |
447 |
0 |
Nanog |
hES | GSE18292 | 10424290 |
10424858 |
568 |
0 |
Nanog |
hES | GSE18292 | 10436669 |
10437060 |
391 |
0 |
Nanog |
hES | GSE18292 | 8410261 |
8410756 |
495 |
0 |
Nanog |
hES | GSE18292 | 8481918 |
8482280 |
362 |
0 |
Nanog |
hES | GSE18292 | 8550504 |
8550865 |
361 |
0 |
Nanog |
hES | GSE18292 | 8617937 |
8618429 |
492 |
0 |
Nanog |
hES | GSE18292 | 9546905 |
9547851 |
946 |
0 |
Nanog |
hES | GSE18292 | 9902460 |
9902722 |
262 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 10004413 |
10004453 |
40 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 10286662 |
10286690 |
28 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 10311065 |
10311092 |
27 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 10544133 |
10544162 |
29 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8310833 |
8310862 |
29 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8474987 |
8475022 |
35 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8530511 |
8530543 |
32 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8852007 |
8852040 |
33 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8947843 |
8947888 |
45 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 8990168 |
8990196 |
28 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9189350 |
9189377 |
27 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9200050 |
9200088 |
38 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9245999 |
9246032 |
33 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9283302 |
9283329 |
27 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9629642 |
9629671 |
29 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9675343 |
9675370 |
27 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9680667 |
9680698 |
31 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9895694 |
9895722 |
28 |
0 |
Oct1 |
H2O2-Hela | GSE14283 | 9945697 |
9945751 |
54 |
0 |
Oct1 |
Hela | GSE14283 | 10004375 |
10004453 |
78 |
0 |
Oct1 |
Hela | GSE14283 | 10016914 |
10016943 |
29 |
0 |
Oct1 |
Hela | GSE14283 | 10233200 |
10233234 |
34 |
0 |
Oct1 |
Hela | GSE14283 | 8310822 |
8310862 |
40 |
0 |
Oct1 |
Hela | GSE14283 | 8474987 |
8475027 |
40 |
0 |
Oct1 |
Hela | GSE14283 | 8597806 |
8597834 |
28 |
0 |
Oct1 |
Hela | GSE14283 | 8614972 |
8615034 |
62 |
0 |
Oct1 |
Hela | GSE14283 | 8851508 |
8851547 |
39 |
0 |
Oct1 |
Hela | GSE14283 | 8856230 |
8856256 |
26 |
0 |
Oct1 |
Hela | GSE14283 | 8902783 |
8902813 |
30 |
0 |
Oct1 |
Hela | GSE14283 | 8947843 |
8947888 |
45 |
0 |
Oct1 |
Hela | GSE14283 | 8990167 |
8990196 |
29 |
0 |
Oct1 |
Hela | GSE14283 | 9136277 |
9136319 |
42 |
0 |
Oct1 |
Hela | GSE14283 | 9161536 |
9161614 |
78 |
0 |
Oct1 |
Hela | GSE14283 | 9188043 |
9188073 |
30 |
0 |
Oct1 |
Hela | GSE14283 | 9200044 |
9200088 |
44 |
0 |
Oct1 |
Hela | GSE14283 | 9235787 |
9235822 |
35 |
0 |
Oct1 |
Hela | GSE14283 | 9246000 |
9246036 |
36 |
0 |
Oct1 |
Hela | GSE14283 | 9370216 |
9370248 |
32 |
0 |
Oct1 |
Hela | GSE14283 | 9378739 |
9378774 |
35 |
0 |
Oct1 |
Hela | GSE14283 | 9572992 |
9573033 |
41 |
0 |
Oct1 |
Hela | GSE14283 | 9629642 |
9629671 |
29 |
0 |
Oct1 |
Hela | GSE14283 | 9643950 |
9643981 |
31 |
0 |
Oct1 |
Hela | GSE14283 | 9675342 |
9675372 |
30 |
0 |
Oct1 |
Hela | GSE14283 | 9680667 |
9680726 |
59 |
0 |
Oct1 |
Hela | GSE14283 | 9751202 |
9751235 |
33 |
0 |
Oct1 |
Hela | GSE14283 | 9945697 |
9945742 |
45 |
0 |
Oct4 |
ES | GSE20650 | 10329242 |
10329531 |
289 |
0 |
Oct4 |
hES | GSE21916 | 10329039 |
10329543 |
504 |
0 |
PAX3-FKHR |
Rh4 | GSE19063 | 8797757 |
8801633 |
3876 |
0 |
RNAII |
Tamoxifen-MCF7 | GSE14664 | 10311036 |
10311136 |
100 |
0 |
Rb |
Quiescent | GSE19898 | 10356253 |
10356447 |
194 |
0 |
Sox2 |
hES | GSE18292 | 10016576 |
10016843 |
267 |
0 |
Sox2 |
hES | GSE18292 | 10329193 |
10329657 |
464 |
0 |
Sox2 |
hES | GSE18292 | 10356266 |
10356542 |
276 |
0 |
TAF |
Hela | GSE8489 | 8976830 |
8977005 |
175 |
0 |
TAF |
k562 | GSE8489 | 9871348 |
9871685 |
337 |
0 |
TFAP2C |
MCF7 | GSE21234 | 9754914 |
9755155 |
241 |
0 |
USF1 |
HepG2 | E | 9466364 |
9466701 |
337 |
0 |
hScc1 |
Bcell | GSE12603 | 10356159 |
10356593 |
434 |
0 |
hScc1 |
Bcell | GSE12603 | 8847429 |
8847824 |
395 |
0 |
hScc1 |
Bcell | GSE12603 | 9080937 |
9081264 |
327 |
0 |
hScc1 |
Bcell | GSE12603 | 9596492 |
9597017 |
525 |
0 |
hScc1 |
Bcell | GSE12603 | 9780125 |
9780493 |
368 |
0 |
hScc1 |
Bcell | GSE12603 | 9932821 |
9933208 |
387 |
0 |
hScc1 |
CdLS | GSE12603 | 10356159 |
10356593 |
434 |
0 |
hScc1 |
CdLS | GSE12603 | 8885673 |
8886097 |
424 |
0 |
hScc1 |
CdLS | GSE12603 | 9780163 |
9780605 |
442 |
0 |
hScc1 |
CdLS | GSE12603 | 9932821 |
9933208 |
387 |
0 |
p63 |
keratinocytes | GSE17611 | 10048722 |
10049665 |
943 |
0 |
p63 |
keratinocytes | GSE17611 | 10552598 |
10553506 |
908 |
0 |
p63 |
keratinocytes | GSE17611 | 8618052 |
8618983 |
931 |
0 |
Micro RNA Name |
Stem Loop Name |
The chromosome that miRNA located |
Publication |
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hsa-let-7c |
hsa-let-7c |
21 |
17674361 |
hsa-let-7c* |
hsa-let-7c |
21 |
17674361 |
hsa-miR-1 |
hsa-mir-1-2 |
18 |
19586368 |
hsa-miR-1 |
hsa-mir-1-1 |
20 |
19586368 |
hsa-miR-125b |
hsa-mir-125b-1 |
11 |
17674361 |
hsa-miR-125b |
hsa-mir-125b-2 |
21 |
17674361 |
hsa-miR-125b-2* |
hsa-mir-125b-2 |
21 |
17674361 |
hsa-miR-133a |
hsa-mir-133a-1 |
18 |
19586368 |
hsa-miR-133a |
hsa-mir-133a-2 |
20 |
19586368 |
hsa-miR-133b |
hsa-mir-133b |
6 |
19586368 |
hsa-miR-206 |
hsa-mir-206 |
6 |
19586368 |
hsa-miR-99a |
hsa-mir-99a |
21 |
17674361 |
hsa-miR-99a* |
hsa-mir-99a |
21 |
17674361 |