AutismKB 2.0

Annotation Detail for PTPRD


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Basic Information Top
Gene Symbol:PTPRD ( HPTP,HPTPD,HPTPDELTA,MGC119750,MGC119751,MGC119752,MGC119753,PTPD,RPTPDELTA )
Gene Full Name: protein tyrosine phosphatase, receptor type, D
Band: 9p24.1-p23
Quick LinksEntrez ID:5789; OMIM: 601598; Uniprot ID:PTPRD_HUMAN; ENSEMBL ID: ENSG00000153707; HGNC ID: 9668
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
254N-linked (GlcNAc...) (Potential).
299N-linked (GlcNAc...) (Potential).
724N-linked (GlcNAc...) (Potential).
832N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
254N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
299N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
724N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
832N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
22Phosphothreonine(MAPK)HMM predict
89Phosphothreonine(MAPK)HMM predict
96Phosphotyrosine(EGFR)HMM predict
186Phosphothreonine(CDC2)HMM predict
200Phosphoserine(CK1)HMM predict
200Phosphoserine(CK2)HMM predict
217Phosphotyrosine(Abl)HMM predict
239O-linkedHMM predict
254N-linkedHMM predict
299N-linkedHMM predict
338Phosphoserine(IKK)HMM predict
367Phosphotyrosine(SRC)HMM predict
367Phosphotyrosine(INSR)HMM predict
367Phosphotyrosine(Syk)HMM predict
405O-linkedHMM predict
413O-linkedHMM predict
454Phosphotyrosine(Syk)HMM predict
455SulfotyrosineHMM predict
489Phosphoserine(PKA)HMM predict
528Phosphoserine(CK2)HMM predict
531Phosphoserine(CK1)HMM predict
531Phosphoserine(IKK)HMM predict
610Phosphoserine(PKA)HMM predict
617Phosphoserine(IKK)HMM predict
620Phosphoserine(IKK)HMM predict
622O-linkedHMM predict
724N-linkedHMM predict
731Phosphoserine(IKK)HMM predict
796Phosphotyrosine(SRC)HMM predict
799O-linkedHMM predict
801O-linkedHMM predict
832N-linkedHMM predict
837N-linkedHMM predict
870Phosphothreonine(PKC)HMM predict
931O-linkedHMM predict
932O-linkedHMM predict
1006Phosphoserine(MAPK)HMM predict
1082Phosphoserine(IKK)HMM predict
1091PhosphoserineHMM predict
1100Phosphothreonine(PKA)HMM predict
1303Phosphoserine(PKA)HMM predict
1303Phosphoserine(PKG)HMM predict
1303Phosphoserine(IKK)HMM predict
1303Phosphoserine(PKB)HMM predict
1361Phosphotyrosine(Syk)HMM predict
1410Phosphotyrosine(INSR)HMM predict
1431Phosphoserine(IKK)HMM predict
1503N-linkedHMM predict
1529Phosphothreonine(CDK)HMM predict
1602SulfotyrosineHMM predict
1640N-linkedHMM predict
1658Phosphothreonine(PKC)HMM predict
1699Phosphotyrosine(INSR)HMM predict
1736N-linkedHMM predict
1889Phosphothreonine(CK2)HMM predict
1893Phosphotyrosine(SRC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001040712
  • Location:chr9 8304246-10602508
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TAF k562GSE8489 8288459 8289067 608 15484
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 9940408 9940931 523 0
CTCF CD4GSE12889 9780335 9780525 190 0
CTCF CD4GSE12889 9932912 9933112 200 0
CTCF CD4SISSRdata 9780335 9780525 190 0
CTCF CD4SISSRdata 9932912 9933112 200 0
CTCF JurkatGSE12889 10009209 10009299 90 0
CTCF JurkatGSE12889 10469316 10469461 145 0
ER E2-MCF7GSE14664 8655217 8655265 48 0
ER E2-MCF7GSE14664 8713522 8713604 82 0
ER E2-MCF7GSE14664 8932303 8932394 91 0
ER E2-MCF7GSE14664 9235786 9235826 40 0
ER E2-MCF7GSE14664 9613236 9613271 35 0
ER E2-MCF7GSE14664 9636214 9636303 89 0
ER E2-MCF7GSE14664 9764219 9764251 32 0
ER Fulvestrant-MCF7GSE14664 8655220 8655265 45 0
ER Fulvestrant-MCF7GSE14664 8932306 8932396 90 0
ER Fulvestrant-MCF7GSE14664 9235785 9235826 41 0
ER MCF7GSE19013 9671344 9671783 439 0
KLF4 hESGSE17917 8991892 8992061 169 0
KLF4 hESGSE17917 8992757 8992919 162 0
NRSF JurkatGSE13047 9081329 9081962 633 0
NRSF JurkatGSE13047 9176155 9176559 404 0
NRSF JurkatSISSRdata 9081502 9081883 381 0
NRSF mAbJurkat 9080434 9080898 464 0
NRSF mAbJurkat 9081324 9082784 1460 0
NRSF mAbJurkat 9755365 9755628 263 0
NRSF-mono JurkatQuESTdata 9081383 9081882 499 0
NRSF-mono JurkatQuESTdata 9176154 9176470 316 0
NRSF-poly JurkatQuESTdata 9081384 9082031 647 0
NRSF-poly JurkatQuESTdata 9176189 9176570 381 0
Nanog ESGSE20650 10329077 10329673 596 0
Nanog ESGSE20650 10377404 10377647 243 0
Nanog ESGSE20650 10436609 10436932 323 0
Nanog ESGSE20650 8832836 8833179 343 0
Nanog ESGSE20650 8841041 8841227 186 0
Nanog ESGSE20650 9331136 9331624 488 0
Nanog ESGSE20650 9546959 9547540 581 0
Nanog hESGSE18292 10124431 10124736 305 0
Nanog hESGSE18292 10356279 10356726 447 0
Nanog hESGSE18292 10424290 10424858 568 0
Nanog hESGSE18292 10436669 10437060 391 0
Nanog hESGSE18292 8410261 8410756 495 0
Nanog hESGSE18292 8481918 8482280 362 0
Nanog hESGSE18292 8550504 8550865 361 0
Nanog hESGSE18292 8617937 8618429 492 0
Nanog hESGSE18292 9546905 9547851 946 0
Nanog hESGSE18292 9902460 9902722 262 0
Oct1 H2O2-HelaGSE14283 10004413 10004453 40 0
Oct1 H2O2-HelaGSE14283 10286662 10286690 28 0
Oct1 H2O2-HelaGSE14283 10311065 10311092 27 0
Oct1 H2O2-HelaGSE14283 10544133 10544162 29 0
Oct1 H2O2-HelaGSE14283 8310833 8310862 29 0
Oct1 H2O2-HelaGSE14283 8474987 8475022 35 0
Oct1 H2O2-HelaGSE14283 8530511 8530543 32 0
Oct1 H2O2-HelaGSE14283 8852007 8852040 33 0
Oct1 H2O2-HelaGSE14283 8947843 8947888 45 0
Oct1 H2O2-HelaGSE14283 8990168 8990196 28 0
Oct1 H2O2-HelaGSE14283 9189350 9189377 27 0
Oct1 H2O2-HelaGSE14283 9200050 9200088 38 0
Oct1 H2O2-HelaGSE14283 9245999 9246032 33 0
Oct1 H2O2-HelaGSE14283 9283302 9283329 27 0
Oct1 H2O2-HelaGSE14283 9629642 9629671 29 0
Oct1 H2O2-HelaGSE14283 9675343 9675370 27 0
Oct1 H2O2-HelaGSE14283 9680667 9680698 31 0
Oct1 H2O2-HelaGSE14283 9895694 9895722 28 0
Oct1 H2O2-HelaGSE14283 9945697 9945751 54 0
Oct1 HelaGSE14283 10004375 10004453 78 0
Oct1 HelaGSE14283 10016914 10016943 29 0
Oct1 HelaGSE14283 10233200 10233234 34 0
Oct1 HelaGSE14283 8310822 8310862 40 0
Oct1 HelaGSE14283 8474987 8475027 40 0
Oct1 HelaGSE14283 8597806 8597834 28 0
Oct1 HelaGSE14283 8614972 8615034 62 0
Oct1 HelaGSE14283 8851508 8851547 39 0
Oct1 HelaGSE14283 8856230 8856256 26 0
Oct1 HelaGSE14283 8902783 8902813 30 0
Oct1 HelaGSE14283 8947843 8947888 45 0
Oct1 HelaGSE14283 8990167 8990196 29 0
Oct1 HelaGSE14283 9136277 9136319 42 0
Oct1 HelaGSE14283 9161536 9161614 78 0
Oct1 HelaGSE14283 9188043 9188073 30 0
Oct1 HelaGSE14283 9200044 9200088 44 0
Oct1 HelaGSE14283 9235787 9235822 35 0
Oct1 HelaGSE14283 9246000 9246036 36 0
Oct1 HelaGSE14283 9370216 9370248 32 0
Oct1 HelaGSE14283 9378739 9378774 35 0
Oct1 HelaGSE14283 9572992 9573033 41 0
Oct1 HelaGSE14283 9629642 9629671 29 0
Oct1 HelaGSE14283 9643950 9643981 31 0
Oct1 HelaGSE14283 9675342 9675372 30 0
Oct1 HelaGSE14283 9680667 9680726 59 0
Oct1 HelaGSE14283 9751202 9751235 33 0
Oct1 HelaGSE14283 9945697 9945742 45 0
Oct4 ESGSE20650 10329242 10329531 289 0
Oct4 hESGSE21916 10329039 10329543 504 0
PAX3-FKHR Rh4GSE19063 8797757 8801633 3876 0
RNAII Tamoxifen-MCF7GSE14664 10311036 10311136 100 0
Rb QuiescentGSE19898 10356253 10356447 194 0
Sox2 hESGSE18292 10016576 10016843 267 0
Sox2 hESGSE18292 10329193 10329657 464 0
Sox2 hESGSE18292 10356266 10356542 276 0
TAF HelaGSE8489 8976830 8977005 175 0
TAF k562GSE8489 9871348 9871685 337 0
TFAP2C MCF7GSE21234 9754914 9755155 241 0
USF1 HepG2E 9466364 9466701 337 0
hScc1 BcellGSE12603 10356159 10356593 434 0
hScc1 BcellGSE12603 8847429 8847824 395 0
hScc1 BcellGSE12603 9080937 9081264 327 0
hScc1 BcellGSE12603 9596492 9597017 525 0
hScc1 BcellGSE12603 9780125 9780493 368 0
hScc1 BcellGSE12603 9932821 9933208 387 0
hScc1 CdLSGSE12603 10356159 10356593 434 0
hScc1 CdLSGSE12603 8885673 8886097 424 0
hScc1 CdLSGSE12603 9780163 9780605 442 0
hScc1 CdLSGSE12603 9932821 9933208 387 0
p63 keratinocytesGSE17611 10048722 10049665 943 0
p63 keratinocytesGSE17611 10552598 10553506 908 0
p63 keratinocytesGSE17611 8618052 8618983 931 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7c hsa-let-7c 21 17674361
hsa-let-7c* hsa-let-7c 21 17674361
hsa-miR-1 hsa-mir-1-2 18 19586368
hsa-miR-1 hsa-mir-1-1 20 19586368
hsa-miR-125b hsa-mir-125b-1 11 17674361
hsa-miR-125b hsa-mir-125b-2 21 17674361
hsa-miR-125b-2* hsa-mir-125b-2 21 17674361
hsa-miR-133a hsa-mir-133a-1 18 19586368
hsa-miR-133a hsa-mir-133a-2 20 19586368
hsa-miR-133b hsa-mir-133b 6 19586368
hsa-miR-206 hsa-mir-206 6 19586368
hsa-miR-99a hsa-mir-99a 21 17674361
hsa-miR-99a* hsa-mir-99a 21 17674361
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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