AutismKB 2.0

Annotation Detail for PTPRR


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Basic Information Top
Gene Symbol:PTPRR ( DKFZp781C1038,EC-PTP,FLJ34328,MGC131968,MGC148170,PCPTP1,PTP-SL,PTPBR7,PTPRQ )
Gene Full Name: protein tyrosine phosphatase, receptor type, R
Band: 12q15
Quick LinksEntrez ID:5801; OMIM: 602853; Uniprot ID:PTPRR_HUMAN; ENSEMBL ID: ENSG00000153233; HGNC ID: 9680
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
129N-linked (GlcNAc...) (Potential).
339Phosphoserine; by PKA (By similarity).
370Phosphotyrosine.
Location(AA) Modifications Resource
129N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
339Phosphoserine (by PKA) (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
47Phosphoserine(ATM)HMM predict
68Phosphoserine(CK2)HMM predict
68Phosphoserine(CK1)HMM predict
129N-linkedHMM predict
199Phosphoserine(ATM)HMM predict
319O-linkedHMM predict
324Phosphoserine(CDK)HMM predict
324Phosphoserine(CDC2)HMM predict
339Phosphoserine(PKG)HMM predict
339Phosphoserine(IKK)HMM predict
339Phosphoserine(PKA)HMM predict
340N-linkedHMM predict
361Phosphothreonine(MAPK)HMM predict
438N-linkedHMM predict
446Phosphotyrosine(INSR)HMM predict
512Phosphotyrosine(INSR)HMM predict
527N-linkedHMM predict
532N-linkedHMM predict
557Phosphothreonine(CDC2)HMM predict
637Phosphotyrosine(SRC)HMM predict
637Phosphotyrosine(Jak)HMM predict
652Phosphoserine(PKG)HMM predict
652Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002849
  • Location:chr12 69318128-69600850
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 69503699 69503970 271 0
CTCF G2GSE9613 69519819 69520050 231 0
FOXA1 DLD1GSE12801 69436172 69436732 560 0
FOXA1 DLD1GSE12801 69475704 69475935 231 0
FOXA1 DLD1GSE12801 69477087 69477524 437 0
FOXA1 DLD1GSE12801 69495806 69496459 653 0
FOXA1 MCF7GSE15244 69436345 69436658 313 0
KLF4 hESGSE17917 69463805 69463973 168 0
NRSF JurkatGSE13047 69599292 69600157 865 0
NRSF mAbJurkat 69598821 69600633 1812 0
NRSF-mono JurkatQuESTdata 69599496 69600065 569 0
NRSF-poly JurkatQuESTdata 69599306 69600140 834 0
Nanog hESGSE18292 69535687 69536329 642 0
Oct1 H2O2-HelaGSE14283 69523637 69523677 40 0
Oct1 HelaGSE14283 69453627 69453665 38 0
Oct1 HelaGSE14283 69523639 69523673 34 0
PAX3-FKHR Rh4GSE19063 69534620 69535818 1198 0
RARA MCF7GSE15244 69436231 69437016 785 0
RARG MCF7GSE15244 69436383 69437052 669 0
Sox2 hESGSE18292 69529521 69529831 310 0
p63 keratinocytesGSE17611 69556880 69557705 825 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-96 hsa-mir-96 7 19363478
hsa-miR-96 hsa-mir-96 7 19363478
hsa-miR-96* hsa-mir-96 7 19363478
hsa-miR-96* hsa-mir-96 7 19363478
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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