Annotation Detail for BBS1
Basic Information Top
| Gene Symbol: | BBS1 ( BBS2L2,FLJ23590,MGC126183,MGC126184,MGC51114 ) |
|---|---|
| Gene Full Name: | Bardet-Biedl syndrome 1 |
| Band: | 11q13.2 |
| Quick Links | Entrez ID:582; OMIM: 209901; Uniprot ID:BBS1_HUMAN; ENSEMBL ID: ENSG00000174483; HGNC ID: 966 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | N-acetylalanine. | |
| 369 | Phosphothreonine. | |
| 392 | Phosphothreonine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 28 | Phosphotyrosine(Syk) | HMM predict |
| 180 | Phosphoserine(CK2) | HMM predict |
| 193 | Phosphoserine(CK1) | HMM predict |
| 279 | Phosphoserine(PKG) | HMM predict |
| 476 | Phosphoserine(IKK) | HMM predict |
| 476 | Phosphoserine(ATM) | HMM predict |
| 476 | Phosphoserine(MAPK) | HMM predict |
| 476 | Phosphoserine(CDC2) | HMM predict |
| 480 | Phosphothreonine(PKC) | HMM predict |
| 507 | N-linked | HMM predict |
| 508 | O-linked | HMM predict |
- RefSeq ID: NM_024649
- Location:chr11 66034694-66057659
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Oct4 | hES | GSE17917 | 66034562 | 66034805 | 243 | 11 |
| P300 | T0-glioblastoma | GSE21026 | 66034084 | 66034980 | 896 | 163 |
| Rb | Senescent | GSE19898 | 66034502 | 66034883 | 381 | 2 |
| p130 | Senescent | GSE19898 | 66034443 | 66034877 | 434 | 35 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 66047115 | 66047537 | 422 | 0 |
| H3ac | HepG2 | E | 66034757 | 66035612 | 855 | 0 |
| NRSF | pAb | Jurkat | 66054644 | 66055349 | 705 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 66034353 | 66035252 | 899 | 0 |
| Rb | Growing | GSE19898 | 66035221 | 66035429 | 208 | 0 |
| TAF | Hela | GSE8489 | 66045214 | 66045527 | 313 | 0 |
| TAFII | hES | GSE17917 | 66034421 | 66034976 | 555 | 0 |
| hScc1 | Bcell | GSE12603 | 66034583 | 66034978 | 395 | 0 |
| hScc1 | Bcell | GSE12603 | 66053631 | 66054021 | 390 | 0 |
| p130 | shRbQuiescent | GSE19898 | 66034457 | 66034951 | 494 | 0 |
| p130 | shRbSenescent | GSE19898 | 66034415 | 66035070 | 655 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4750 | mRNA | BBS1 | chr11 | 66034694 | 66057660 | 107 | HTC | chr11 | 66044683 | 66070083 | Sense/Antisense (SA) pairs | |