AutismKB 2.0

Annotation Detail for RAD21


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Basic Information Top
Gene Symbol:RAD21 ( FLJ25655,FLJ40596,HR21,HRAD21,KIAA0078,MCD1,NXP1,SCC1,hHR21 )
Gene Full Name: RAD21 homolog (S. pombe)
Band: 8q24.11
Quick LinksEntrez ID:5885; OMIM: 606462; Uniprot ID:RAD21_HUMAN; ENSEMBL ID: ENSG00000164754; HGNC ID: 9811
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
9Phosphoserine.
46Phosphoserine.
153Phosphoserine.
175Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
28Phosphothreonine(PKC)HMM predict
40Phosphoserine(CK1)HMM predict
46Phosphoserine(MAPK)HMM predict
105Phosphotyrosine(SRC)HMM predict
105Phosphotyrosine(EGFR)HMM predict
136N-linkedHMM predict
198Phosphoserine(CK1)HMM predict
211Phosphotyrosine(Syk)HMM predict
211SulfotyrosineHMM predict
215Phosphotyrosine(Syk)HMM predict
215SulfotyrosineHMM predict
277Phosphoserine(IKK)HMM predict
344Phosphotyrosine(INSR)HMM predict
374Phosphoserine(CK1)HMM predict
580Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_006265
  • Location:chr8 117927354-117956181
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 117968931 117969289 358 12929
CTCF CD4SISSRdata 117968931 117969289 358 12929
ETS1 JurkatGSE17954 117955922 117956725 803 142
FOXA1 MCF7GSE15244 117956034 117956436 402 54
H3K27me3 colorectalcancer 117962602 117962990 388 6615
HIF1 HypoHepG2 117956034 117956574 540 123
HIF1 NormHepG2 117955947 117956650 703 117
Oct1 H2O2-HelaGSE14283 117956566 117956598 32 401
Oct1 HelaGSE14283 117956560 117956600 40 399
Rb GrowingGSE19898 117956105 117956296 191 19
Rb QuiescentGSE19898 117956110 117956699 589 223
Rb SenescentGSE19898 117955894 117956577 683 54
hScc1 CdLSGSE12603 117968957 117969519 562 13057
p130 QuiescentGSE19898 117956124 117956363 239 62
p130 SenescentGSE19898 117956084 117956571 487 146
p130 shRbQuiescentGSE19898 117955989 117956623 634 125
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 117919301 117919843 542 7783
FOXA1 MCF7GSE15244 117914863 117915244 381 12301
FOXA1 MCF7GSE15244 117918587 117919415 828 8354
GATA3 MCF7GSE15244 117924773 117926257 1484 1840
RARA MCF7GSE15244 117914471 117915305 834 12467
RARA MCF7GSE15244 117917394 117917953 559 9681
RARA MCF7GSE15244 117918243 117919616 1373 8425
RARA MCF7GSE15244 117924986 117926151 1165 1786
RARG MCF7GSE15244 117914935 117915278 343 12248
RARG MCF7GSE15244 117918335 117919616 1281 8379
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
GATA3 MCF7GSE15244 117932731 117933337 606 0
H3K4me2 HCT116GSE10453 117954808 117955337 529 0
H3K4me3 colorectalcancer 117953805 117955437 1632 0
H3ac HepG2E 117953805 117955541 1736 0
LIN9 G0GSE7516 117954808 117956537 1729 0
LIN9 SGSE7516 117955802 117956436 634 0
Oct1 HelaGSE14283 117934147 117934187 40 0
Oct1 HelaGSE14283 117943440 117943511 71 0
RARA MCF7GSE15244 117932773 117933235 462 0
Rb QuiescentGSE19898 117955573 117955828 255 0
Rb shRbSenescenceGSE19898 117956006 117956302 296 0
TAF HelaGSE8489 117953805 117955458 1653 0
TAF k562GSE8489 117953805 117955437 1632 0
hScc1 BcellGSE12603 117955541 117956188 647 0
hScc1 CdLSGSE12603 117932534 117933013 479 0
p130 QuiescentGSE19898 117955585 117955871 286 0
p130 SenescentGSE19898 117955413 117955832 419 0
p130 shRbSenescentGSE19898 117955565 117956522 957 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25858 mRNA RAD21 chr8 117955843 117958288 152 mRNA RAD21 chr8 117927354 117956182Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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