Annotation Detail for RAD23B

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Basic Information Top

Gene Symbol:	RAD23B ( HHR23B,HR23B,P58 )
Gene Full Name:	RAD23 homolog B (S. cerevisiae)
Band:	9q31.2
Quick Links	Entrez ID:5887; OMIM: 600062; Uniprot ID:RD23B_HUMAN; ENSEMBL ID: ENSG00000119318; HGNC ID: 9813
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	109076746	109077571	825	8206
P300	T30-glioblastoma	GSE21026	109076672	109077536	864	8261
TFAP2C	MCF7	GSE21234	109084585	109085222	637	461
hScc1	Bcell	GSE12603	109084783	109085845	1062	51
p130	Senescent	GSE19898	109084624	109085601	977	252
p130	shRbSenescent	GSE19898	109084573	109085276	703	440

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	109143282	109143661	379	9182
CTCF	CD4	SISSRdata	109143282	109143661	379	9182
CTCF	Hela	GSE12889	109143319	109143549	230	9145
Myc	K562	GSE19551	109143258	109143567	309	9123
NRSF	Jurkat	GSE13047	109152609	109152890	281	18460
NRSF-mono	Jurkat	QuESTdata	109152608	109152883	275	18456
NRSF-poly	Jurkat	QuESTdata	109152565	109152951	386	18469
TFAP2C	MCF7	GSE21234	109143042	109143741	699	9102
hScc1	Bcell	GSE12603	109143359	109143684	325	9232
hScc1	Bcell	GSE12603	109150917	109151062	145	16700
hScc1	CdLS	GSE12603	109143175	109143684	509	9140

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	109101738	109101979	241
CTCF	CD4	SISSRdata	109101738	109101979	241
ER	E2-MCF7	GSE14664	109094315	109094352	37
ER	Fulvestrant-MCF7	GSE14664	109094317	109094350	33
FOXA1	MCF7	GSE15244	109086097	109086818	721
FoxA1	MCF7	MACSdata	109087450	109087669	219
H3K4me3	colorectal	cancer	109086292	109087062	770
H3ac	HepG2	E	109085956	109087653	1697
Oct1	H2O2-Hela	GSE14283	109102400	109102430	30
Oct1	H2O2-Hela	GSE14283	109110824	109110853	29
Oct1	Hela	GSE14283	109094288	109094348	60
Oct1	Hela	GSE14283	109110824	109110853	29
PHF8	293T	GSE20725	109084721	109086249	1528
PHF8	Hs68plusFBS	GSE20725	109085086	109086685	1599
TAF	Hela	GSE8489	109086463	109087428	965
TAF	Hela	GSE8489	109121656	109121936	280
TAF	k562	GSE8489	109086097	109087062	965
TAF	k562	GSE8489	109087302	109088619	1317
TAF	k562	GSE8489	109115964	109116261	297
TFAP2C	MCF7	GSE21234	109086742	109087129	387
p130	Quiescent	GSE19898	109119495	109119718	223

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-200c	hsa-mir-200c	12	20553627
hsa-miR-200c*	hsa-mir-200c	12	20553627
hsa-miR-205	hsa-mir-205	1	20553627
hsa-miR-21	hsa-mir-21	17	20553627
hsa-miR-21*	hsa-mir-21	17	20553627
hsa-miR-210	hsa-mir-210	11	19141645
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040
hsa-miR-373	hsa-mir-373	19	19141645
hsa-miR-373*	hsa-mir-373	19	19141645

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1271	Unknown	pSILAC	miR-30	RAD23B	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000119318		n_a	n_a	n_a	"epithelium, lymphoblast, lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018