AutismKB 2.0

Annotation Detail for RAP1A


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Basic Information Top
Gene Symbol:RAP1A ( KREV-1,KREV1,RAP1,SMGP21 )
Gene Full Name: RAP1A, member of RAS oncogene family
Band: 1p13.2
Quick LinksEntrez ID:5906; OMIM: 179520; Uniprot ID:RAP1A_HUMAN; ENSEMBL ID: ENSG00000116473; HGNC ID: 9855
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
40Effector region (Probable).
181Cysteine methyl ester.
Location(AA) Modifications Resource
180Phosphoserine (PKA
181Cysteine methyl ester.Swiss-Prot 53.0
181S-geranylgeranyl cysteine.Swiss-Prot 53.0
Location(AA) Modification Resource
40Phosphotyrosine(Jak)HMM predict
71Phosphotyrosine(INSR)HMM predict
83O-linkedHMM predict
169PhosphothreonineHMM predict
181CysteineHMM predict
181S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001010935
  • Location:chr1 111963927-112057622
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 111949018 111949837 819 14500
FoxA1 MCF7MACSdata 111961077 111961297 220 2741
NFkBII GM12878GSE19485 111959838 111961502 1664 3258
P300 T30-glioblastomaGSE21026 111948798 111950175 1377 14441
hScc1 CdLSGSE12603 111960188 111961128 940 3270
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 CdLSGSE12603 112058861 112059197 336 1407
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 111963894 111964352 458 0
CTCF G2GSE9613 111992441 111992701 260 0
CTCF G2GSE9613 112000426 112000838 412 0
Fos K562GSE19551 112024311 112024739 428 0
H3ac HepG2E 111966170 111966749 579 0
Oct1 H2O2-HelaGSE14283 111982769 111982811 42 0
Oct1 HelaGSE14283 111982769 111982811 42 0
P300 T30-glioblastomaGSE21026 112051963 112052848 885 0
Rb QuiescentGSE19898 111964424 111965071 647 0
Rb SenescentGSE19898 111964293 111965233 940 0
TAF k562GSE8489 111966170 111967103 933 0
TFAP2C MCF7GSE21234 112034485 112034818 333 0
VDR GM10855-stimGSE22484 112032881 112048345 15464 0
VDR GM10861-stimGSE22484 112039516 112041719 2203 0
hScc1 BcellGSE12603 111992362 111992701 339 0
hScc1 BcellGSE12603 112000426 112000911 485 0
hScc1 CdLSGSE12603 112000426 112000946 520 0
hScc1 G2GSE9613 112000426 112000911 485 0
p63 keratinocytesGSE17611 112048625 112049532 907 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1291 mRNA RAP1A chr1 111796881 111967777 21724 mRNA AD026 chr1 111738013 111818605 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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