AutismKB 2.0

Annotation Detail for OPN1LW


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Basic Information Top
Gene Symbol:OPN1LW ( CBBM,CBP,COD5,RCP,ROP )
Gene Full Name: opsin 1 (cone pigments), long-wave-sensitive
Band: Xq28
Quick LinksEntrez ID:5956; OMIM: 300822; Uniprot ID:OPSR_HUMAN; ENSEMBL ID: ENSG00000102076; HGNC ID: 9936
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
34N-linked (GlcNAc...) (Probable).
312N6-(retinylidene)lysine.
Location(AA) Modifications Resource
34N-linked (GlcNAc...) (Probable).Swiss-Prot 53.0
Location(AA) Modification Resource
19SulfotyrosineHMM predict
19Phosphotyrosine(Syk)HMM predict
31O-linkedHMM predict
34N-linkedHMM predict
201PhosphothreonineHMM predict
228S-palmitoylHMM predict
280S-palmitoylHMM predict
351Phosphoserine(CK1)HMM predict
353Phosphothreonine(PKC)HMM predict
356O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_020061
  • Location:chrX 153062938-153077698
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF JurkatGSE12889 153055422 153055682 260 7387
CTCF G2GSE9613 153055244 153055987 743 7323
CTCF G2GSE9613 153059485 153059890 405 3251
CTCF G2GSE9613 153062025 153062513 488 670
Fos K562GSE19551 153055122 153055724 602 7516
Oct1 HelaGSE14283 153057265 153057335 70 5639
hScc1 BcellGSE12603 153055244 153055849 605 7392
hScc1 CdLSGSE12603 153055286 153055827 541 7382
hScc1 G2GSE9613 153054896 153055827 931 7577
hScc1 G2GSE9613 153059440 153059890 450 3274
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 153077858 153078645 787 553
CTCF G2GSE9613 153078902 153079288 386 1397
CTCF G2GSE9613 153083386 153083843 457 5916
RARA MCF7GSE15244 153082120 153082357 237 4540
RARA MCF7GSE15244 153083386 153083843 457 5916
RARA MCF7GSE15244 153085041 153085300 259 7472
RARG MCF7GSE15244 153082120 153082357 237 4540
RARG MCF7GSE15244 153083386 153083843 457 5916
hScc1 G2GSE9613 153078100 153078553 453 628
hScc1 G2GSE9613 153083386 153083843 457 5916
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 153070052 153070717 665 0
CTCF G2GSE9613 153071533 153072111 578 0
CTCF G2GSE9613 153073551 153075373 1822 0
RARG MCF7GSE15244 153071702 153072517 815 0
hScc1 BcellGSE12603 153073158 153074940 1782 0
hScc1 G2GSE9613 153073968 153074357 389 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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