AutismKB 2.0

Annotation Detail for RFX2


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Basic Information Top
Gene Symbol:RFX2 ( FLJ14226 )
Gene Full Name: regulatory factor X, 2 (influences HLA class II expression)
Band: 19p13.3
Quick LinksEntrez ID:5990; OMIM: 142765; Uniprot ID:RFX2_HUMAN; ENSEMBL ID: ENSG00000087903; HGNC ID: 9983
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
10Phosphoserine(CDC2)HMM predict
28Phosphoserine(CDC2)HMM predict
118Phosphothreonine(PKC)HMM predict
118O-linkedHMM predict
122O-linkedHMM predict
123O-linkedHMM predict
129O-linkedHMM predict
142Phosphoserine(CDC2)HMM predict
168O-linkedHMM predict
168O-linkedHMM predict
276Phosphoserine(CDC2)HMM predict
287Phosphotyrosine(SRC)HMM predict
287Phosphotyrosine(Syk)HMM predict
287Phosphotyrosine(INSR)HMM predict
313Phosphoserine(ATM)HMM predict
321Phosphoserine(CK2)HMM predict
321Phosphoserine(IKK)HMM predict
322Phosphothreonine(CDC2)HMM predict
322Phosphothreonine(CDK)HMM predict
337Phosphotyrosine(Jak)HMM predict
337Phosphotyrosine(Syk)HMM predict
406Phosphoserine(CDC2)HMM predict
406Phosphoserine(CK1)HMM predict
407Phosphoserine(ATM)HMM predict
407O-linkedHMM predict
411O-linkedHMM predict
416Phosphoserine(ATM)HMM predict
510Phosphothreonine(PKC)HMM predict
530N-linkedHMM predict
535N-linkedHMM predict
602Phosphoserine(CDK)HMM predict
602Phosphoserine(CDC2)HMM predict
664Phosphothreonine(MAPK)HMM predict
695Phosphoserine(IKK)HMM predict
714Phosphoserine(CK1)HMM predict
714Phosphoserine(PKB)HMM predict
717N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000635
  • Location:chr19 5944175-6061553
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 6061418 6061818 400 65
CTCF G2GSE9613 6067827 6068087 260 6404
Fos K562GSE19551 6061388 6062068 680 175
PHF8 293TGSE20725 6061325 6062148 823 183
PolII HeLaGSE12783 6060943 6062228 1285 32
Rb GrowingGSE19898 6061738 6061913 175 272
Rb SenescentGSE19898 6061459 6061962 503 157
STAT1 IFNSISSRdata 6062266 6062795 529 977
p130 SenescentGSE19898 6061563 6061984 421 220
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 5938311 5938631 320 5705
CTCF CD4SISSRdata 5938311 5938631 320 5705
CTCF G2GSE9613 5938345 5938878 533 5564
STAT1 HeLaGSE12782 5938155 5939336 1181 5430
STAT1 HeLaGSE12783 5938189 5939174 985 5494
STAT1 IFNSISSRdata 5938240 5939096 856 5508
hScc1 BcellGSE12603 5938345 5939139 794 5434
hScc1 CdLSGSE12603 5938345 5938753 408 5627
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 5973305 5973570 265 0
CTCF CD4GSE12889 5999903 6000132 229 0
CTCF CD4GSE12889 6051600 6051787 187 0
CTCF CD4SISSRdata 5973305 5973570 265 0
CTCF CD4SISSRdata 5999903 6000132 229 0
CTCF CD4SISSRdata 6051600 6051787 187 0
CTCF G2GSE9613 5946091 5946500 409 0
CTCF G2GSE9613 5948174 5948729 555 0
CTCF G2GSE9613 5958870 5959117 247 0
CTCF G2GSE9613 5972862 5974192 1330 0
CTCF G2GSE9613 5975577 5976001 424 0
CTCF G2GSE9613 5998611 6000273 1662 0
CTCF G2GSE9613 6025454 6025859 405 0
ER Breast-CancerGSE22609 5973950 5974800 850 0
ER E2-MCF7GSE14664 6047009 6047049 40 0
ER Fulvestrant-MCF7GSE14664 5968422 5968457 35 0
FOXA1 MCF7GSE15244 5971024 5973465 2441 0
FOXA1 MCF7GSE15244 6007208 6008387 1179 0
Fos K562GSE19551 6011556 6012538 982 0
FoxA1 MCF7MACSdata 5971565 5971986 421 0
FoxA1 MCF7MACSdata 5972129 5972294 165 0
FoxA1 MCF7MACSdata 6007173 6007433 260 0
FoxA1 MCF7MACSdata 6017024 6017143 119 0
GABP k562GSE8489 6050538 6052263 1725 0
Gata2 K562GSE18868 6011546 6012655 1109 0
IGF1R DFBGSE23792 6018240 6018816 576 0
Myc K562GSE19551 6043177 6043982 805 0
Nanog hESGSE18292 5999939 6000207 268 0
Oct1 H2O2-HelaGSE14283 5955611 5955640 29 0
Oct1 H2O2-HelaGSE14283 5996233 5996263 30 0
Oct1 HelaGSE14283 5970736 5970801 65 0
Oct1 HelaGSE14283 5974086 5974124 38 0
Oct1 HelaGSE14283 5996230 5996275 45 0
P300 T30-glioblastomaGSE21026 6007738 6009014 1276 0
SRF GMOGSE8489 5950298 5950625 327 0
TAF k562GSE8489 6050574 6051443 869 0
TFAP2C MCF7GSE21234 5944871 5945504 633 0
TFAP2C MCF7GSE21234 6007219 6007714 495 0
TFAP2C MCF7GSE21234 6008153 6008754 601 0
TFAP2C MCF7GSE21234 6011928 6012266 338 0
USF1 HepG2E 6008262 6009109 847 0
hScc1 BcellGSE12603 5973142 5973564 422 0
hScc1 BcellGSE12603 5999153 6000507 1354 0
hScc1 BcellGSE12603 6017625 6017803 178 0
hScc1 BcellGSE12603 6025724 6025859 135 0
hScc1 CdLSGSE12603 5973079 5973645 566 0
hScc1 CdLSGSE12603 5999505 6000308 803 0
hScc1 G2GSE9613 5973003 5973645 642 0
hScc1 G2GSE9613 5999680 6000415 735 0
p130 QuiescentGSE19898 6018035 6018257 222 0
p130 shRbQuiescentGSE19898 6007805 6008662 857 0
p130 shRbQuiescentGSE19898 6059676 6060431 755 0
p63 keratinocytesGSE17611 6043001 6044054 1053 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12560 EST chr19 5929413 5971374 27200 mRNA RFX2 chr19 5944174 6061554 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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