AutismKB 2.0

Annotation Detail for RFX3


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Basic Information Top
Gene Symbol:RFX3 ( MGC87155,bA32F11.1 )
Gene Full Name: regulatory factor X, 3 (influences HLA class II expression)
Band: 9p24.2
Quick LinksEntrez ID:5991; OMIM: 601337; Uniprot ID:RFX3_HUMAN; ENSEMBL ID: ENSG00000080298; HGNC ID: 9984
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
8Phosphoserine(CK1)HMM predict
12O-linkedHMM predict
18O-linkedHMM predict
19Phosphoserine(CAMK2)HMM predict
19Phosphoserine(IKK)HMM predict
67Phosphotyrosine(INSR)HMM predict
77Phosphotyrosine(SRC)HMM predict
86Phosphoserine(ATM)HMM predict
105O-linkedHMM predict
109O-linkedHMM predict
111Phosphoserine(IKK)HMM predict
151O-linkedHMM predict
155Phosphoserine(CDC2)HMM predict
174Phosphothreonine(PKC)HMM predict
178Phosphoserine(CAMK2)HMM predict
260Phosphoserine(CDC2)HMM predict
271Phosphotyrosine(INSR)HMM predict
271Phosphotyrosine(SRC)HMM predict
271Phosphotyrosine(Syk)HMM predict
285Phosphotyrosine(Syk)HMM predict
307O-linkedHMM predict
392O-linkedHMM predict
395O-linkedHMM predict
402N-linkedHMM predict
404Phosphoserine(CK1)HMM predict
495Phosphothreonine(PKC)HMM predict
515N-linkedHMM predict
520N-linkedHMM predict
649Phosphothreonine(MAPK)HMM predict
674Phosphoserine(CK1)HMM predict
688Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002919
  • Location:chr9 3237036-3515982
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 3516852 3517776 924 1332
H3ac HepG2E 3516674 3518416 1742 1563
Myc K562GSE19551 3524760 3524960 200 8878
PHF8 293TGSE20725 3515803 3517291 1488 565
PHF8 HeLaGSE20725 3515400 3517528 2128 482
PHF8 Hs68plusFBSGSE20725 3515293 3517735 2442 532
PolII HeLaGSE12783 3515240 3517879 2639 577
Rb GrowingGSE19898 3516407 3516809 402 626
Rb QuiescentGSE19898 3515788 3516413 625 118
Rb QuiescentGSE19898 3516415 3516704 289 577
Rb SenescentGSE19898 3516262 3517165 903 731
TAF HelaGSE8489 3516674 3518226 1552 1468
TAF k562GSE8489 3516815 3518445 1630 1648
hScc1 BcellGSE12603 3516134 3516852 718 511
p130 QuiescentGSE19898 3515995 3516986 991 508
p130 SenescentGSE19898 3515549 3517071 1522 328
p130 shRbQuiescentGSE19898 3515517 3517113 1596 333
p130 shRbSenescentGSE19898 3516080 3517340 1260 728
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 3281669 3282468 799 0
CTCF CD4GSE12889 3431186 3431490 304 0
CTCF CD4GSE12889 3457581 3457990 409 0
CTCF CD4SISSRdata 3431186 3431490 304 0
CTCF CD4SISSRdata 3457581 3457990 409 0
ER Fulvestrant-MCF7GSE14664 3260370 3260402 32 0
Fos K562GSE19551 3465310 3465681 371 0
FoxA1 MCF7MACSdata 3481033 3481267 234 0
FoxA1 MCF7MACSdata 3507547 3507719 172 0
H3K4me2 HCT116GSE10453 3514526 3515031 505 0
H3K4me3 colorectalcancer 3514802 3515381 579 0
H3ac HepG2E 3514459 3515577 1118 0
Myc K562GSE19551 3457678 3457929 251 0
NRSF JurkatSISSRdata 3272522 3272683 161 0
NRSF-mono JurkatQuESTdata 3272478 3272768 290 0
NRSF-poly JurkatQuESTdata 3272474 3272751 277 0
Nanog hESGSE18292 3279742 3280793 1051 0
Oct1 H2O2-HelaGSE14283 3349580 3349635 55 0
Oct1 H2O2-HelaGSE14283 3429551 3429580 29 0
Oct1 HelaGSE14283 3258834 3258926 92 0
Oct1 HelaGSE14283 3313370 3313410 40 0
Oct1 HelaGSE14283 3347258 3347293 35 0
Oct1 HelaGSE14283 3417244 3417310 66 0
SRF GMOGSE8489 3401164 3401330 166 0
TAF k562GSE8489 3498344 3499257 913 0
TAF k562GSE8489 3512805 3515416 2611 0
TFAP2C MCF7GSE21234 3468595 3469194 599 0
hScc1 BcellGSE12603 3457443 3458106 663 0
hScc1 CdLSGSE12603 3457346 3458213 867 0
p130 QuiescentGSE19898 3515555 3515989 434 0
p130 shRbSenescentGSE19898 3515600 3516077 477 0
p63 keratinocytesGSE17611 3498727 3499407 680 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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