Annotation Detail for RFX4
Basic Information Top
| Gene Symbol: | RFX4 ( NYD-SP10 ) |
|---|---|
| Gene Full Name: | regulatory factor X, 4 (influences HLA class II expression) |
| Band: | 12q23.3 |
| Quick Links | Entrez ID:5992; OMIM: 603958; Uniprot ID:RFX4_HUMAN; ENSEMBL ID: ENSG00000111783; HGNC ID: 9985 |
| Relate to Another Database: | SFARIGene; denovo-db |
Post Translation Modification- RefSeq ID: NM_002920
- Location:chr12 105519079-105651413
- strand:+
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 105518848 | 105519426 | 578 | 0 |
| CTCF | G2 | GSE9613 | 105549782 | 105550160 | 378 | 0 |
| CTCF | G2 | GSE9613 | 105600343 | 105601111 | 768 | 0 |
| FOXA1 | MCF7 | GSE15244 | 105562684 | 105563365 | 681 | 0 |
| NRSF | pAb | Jurkat | 105552147 | 105552497 | 350 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 105534417 | 105534451 | 34 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 105551031 | 105551065 | 34 | 0 |
| Oct1 | Hela | GSE14283 | 105534414 | 105534453 | 39 | 0 |
| Oct1 | Hela | GSE14283 | 105563394 | 105563428 | 34 | 0 |
| Oct1 | Hela | GSE14283 | 105565017 | 105565049 | 32 | 0 |
| TFAP2C | MCF7 | GSE21234 | 105560787 | 105561324 | 537 | 0 |
| USF1 | HepG2 | E | 105562684 | 105564272 | 1588 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-132 | hsa-mir-132 | 17 | 17553428 |
| hsa-miR-132* | hsa-mir-132 | 17 | 17553428 |
| hsa-miR-219-1-3p | hsa-mir-219-1 | 6 | 17553428 |
| hsa-miR-219-2-3p | hsa-mir-219-2 | 9 | 17553428 |
| hsa-miR-219-5p | hsa-mir-219-1 | 6 | 17553428 |
| hsa-miR-219-5p | hsa-mir-219-2 | 9 | 17553428 |
| No data |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6548 | mRNA | RFX4 | chr12 | 105497416 | 105629753 | 145 | EST | chr12 | 105611591 | 105639048 | Sense/Antisense (SA) pairs | |