AutismKB 2.0

Annotation Detail for CCDC90B


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Basic Information Top
Gene Symbol:CCDC90B ( MDS011,MDS025,MGC104239 )
Gene Full Name: coiled-coil domain containing 90B
Band: 11q14.1
Quick LinksEntrez ID:60492; OMIM: NA; Uniprot ID:CC90B_HUMAN; ENSEMBL ID: ENSG00000137500; HGNC ID: 28108
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
104Phosphothreonine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021825
  • Location:chr11 82650153-82675024
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 82681724 82681927 203 6801
CTCF CD4SISSRdata 82681724 82681927 203 6801
H3ac HepG2E 82675411 82675631 220 497
NRSF-mono JurkatQuESTdata 82682969 82683339 370 8130
NRSF-poly JurkatQuESTdata 82682980 82683349 369 8140
Oct1 H2O2-HelaGSE14283 82681926 82681953 27 6915
Oct1 H2O2-HelaGSE14283 82683548 82683579 31 8539
Oct1 HelaGSE14283 82681895 82681953 58 6900
RARA MCF7GSE15244 82675077 82675631 554 330
TAF HelaGSE8489 82675377 82675631 254 480
TAF k562GSE8489 82675229 82675631 402 406
hScc1 BcellGSE12603 82681762 82682014 252 6864
hScc1 CdLSGSE12603 82681689 82682151 462 6896
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 82646444 82647054 610 3405
FOXA1 DLD1GSE12801 82645323 82646014 691 4485
Oct1 HelaGSE14283 82649535 82649567 32 603
P300 T30-glioblastomaGSE21026 82646289 82647011 722 3504
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 82664575 82664609 34 0
ETS1 JurkatGSE17954 82674062 82675687 1625 0
FOXA1 MCF7GSE15244 82673634 82675117 1483 0
H3K4me2 HCT116GSE10453 82673600 82674200 600 0
H3K4me3 colorectalcancer 82673634 82674692 1058 0
H3ac HepG2E 82673014 82674976 1962 0
Nanog hESGSE18292 82673390 82673627 237 0
Oct1 HelaGSE14283 82664558 82664609 51 0
Oct1 HelaGSE14283 82665165 82665200 35 0
PHF8 293TGSE20725 82674170 82675764 1594 0
PHF8 HeLaGSE20725 82673944 82675761 1817 0
PHF8 Hs68minusFBSGSE20725 82673979 82675365 1386 0
PHF8 Hs68plusFBSGSE20725 82674160 82675522 1362 0
RARA MCF7GSE15244 82673634 82674799 1165 0
RARG MCF7GSE15244 82673988 82674905 917 0
TAF HelaGSE8489 82673600 82674457 857 0
hScc1 BcellGSE12603 82674342 82675077 735 0
hScc1 CdLSGSE12603 82674799 82675117 318 0
hScc1 G2GSE9613 82674609 82675269 660 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4974 mRNA chr11 82674818 82812206 207 mRNA MDS025 chr11 82650153 82675025Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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