Annotation Detail for C4orf41

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Basic Information Top

Gene Symbol:	C4orf41 ( FLJ12716 )
Gene Full Name:	chromosome 4 open reading frame 41
Band:	4q35.1
Quick Links	Entrez ID:60684; OMIM: NA; Uniprot ID:CD041_HUMAN; ENSEMBL ID: ENSG00000168538; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
245	N6-acetyllysine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_199053
Location:chr4 184817439-184871737
strand:+

Upstream the gene:0 results
Downstream the gene:10 results
Inside the gene:3 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	Jurkat	GSE17954	184880871	184882107	1236	9752
CTCF	CD4	GSE12889	184879562	184879794	232	7941
CTCF	CD4	SISSRdata	184879562	184879794	232	7941
CTCF	G2	GSE9613	184881315	184881555	240	9698
CTCF	G2	GSE9613	184890995	184891698	703	19609
VDR	GM10861-Unstim	GSE22484	184880847	184881912	1065	9642
VDR	GM10861-stim	GSE22484	184880803	184881991	1188	9660
hScc1	Bcell	GSE12603	184879439	184879914	475	7939
hScc1	Bcell	GSE12603	184881237	184881735	498	9749
hScc1	Bcell	GSE12603	184890832	184891547	715	19452

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	184816922	184818114	1192	0
H3ac	HepG2	E	184817775	184818286	511	0
TAFII	hES	GSE17917	184817244	184817764	520	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
20504	mRNA	FLJ12716	chr4	184955594	185009893	96	EST		chr4	184947390	184955690	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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