Annotation Detail for RPN1

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Basic Information Top

Gene Symbol:	RPN1 ( DKFZp686B16177,OST1,RBPH1 )
Gene Full Name:	ribophorin I
Band:	3q21.3
Quick Links	Entrez ID:6184; OMIM: 180470; Uniprot ID:RPN1_HUMAN; ENSEMBL ID: ENSG00000163902; HGNC ID: 10381
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
187	N6-acetyllysine.
299	N-linked (GlcNAc...).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T0-glioblastoma	GSE21026	129852350	129852962	612	248
CTCF	Jurkat	GSE12889	129866981	129867133	152	14649
ETS1	Jurkat	GSE17954	129851944	129852894	950	11
Sox2	hES	GSE18292	129866995	129867205	210	14692

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	129809963	129810162	199	11440
CTCF	CD4	SISSRdata	129809963	129810162	199	11440
CTCF	G2	GSE9613	129805510	129806130	620	15683
CTCF	G2	GSE9613	129808698	129810018	1320	12145
CTCF	G2	GSE9613	129811602	129811915	313	9744
CTCF	G2	GSE9613	129812319	129812752	433	8967
CTCF	G2	GSE9613	129814200	129814947	747	6929
CTCF	G2	GSE9613	129815625	129815877	252	5752
CTCF	G2	GSE9613	129818862	129819713	851	2215
H3K4me3	colorectal	cancer	129819982	129820542	560	1241
H3ac	HepG2	E	129819561	129821180	1619	1132
VDR	GM10861-Unstim	GSE22484	129818560	129820445	1885	2000
VDR	GM10861-stim	GSE22484	129818743	129820448	1705	1907
hScc1	Bcell	GSE12603	129809371	129810315	944	11660
hScc1	Bcell	GSE12603	129814200	129814651	451	7077
hScc1	Bcell	GSE12603	129818934	129819776	842	2148
hScc1	CdLS	GSE12603	129818964	129819537	573	2252
hScc1	G2	GSE9613	129815583	129815843	260	5790
hScc1	G2	GSE9613	129819001	129819561	560	2222
p130	Senescent	GSE19898	129818906	129819797	891	2151
p130	shRbQuiescent	GSE19898	129819100	129819810	710	2048
p130	shRbQuiescent	GSE19898	129820912	129821251	339	421
p130	shRbSenescent	GSE19898	129818993	129819574	581	2219

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	129821950	129822252	302
CTCF	G2	GSE9613	129823151	129823567	416
CTCF	G2	GSE9613	129827136	129827430	294
CTCF	G2	GSE9613	129828335	129828712	377
CTCF	G2	GSE9613	129851895	129852327	432
Fos	K562	GSE19551	129852179	129852562	383
H3K4me2	HCT116	GSE10453	129850134	129850325	191
H3K4me3	colorectal	cancer	129850788	129851525	737
H3ac	HepG2	E	129850134	129850325	191
H3ac	HepG2	E	129850788	129851668	880
Oct1	H2O2-Hela	GSE14283	129828620	129828657	37
Oct1	H2O2-Hela	GSE14283	129844881	129844913	32
Oct1	Hela	GSE14283	129828619	129828656	37
Oct1	Hela	GSE14283	129844881	129844913	32
PHF8	HeLa	GSE20725	129851318	129852868	1550
PHF8	Hs68minusFBS	GSE20725	129851788	129852630	842
PHF8	Hs68plusFBS	GSE20725	129851668	129852631	963
Rb	Senescent	GSE19898	129852159	129852566	407
Rb	shRbSenescence	GSE19898	129852150	129852402	252
TAF	k562	GSE8489	129850788	129851525	737
TAFII	hES	GSE17917	129852187	129852590	403
hScc1	Bcell	GSE12603	129851895	129852541	646
hScc1	G2	GSE9613	129851820	129852289	469
p130	Senescent	GSE19898	129851069	129851410	341
p130	Senescent	GSE19898	129852004	129852602	598
p130	shRbSenescent	GSE19898	129852082	129852533	451

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
18650	EST		chr3	129822045	129824154	146	mRNA	RPN1	chr3	129821510	129852378	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018