Annotation Detail for RPS3A

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Basic Information Top

Gene Symbol:	RPS3A ( FTE1,MFTL,MGC23240 )
Gene Full Name:	ribosomal protein S3A
Band:	4q31.3
Quick Links	Entrez ID:6189; OMIM: 180478; Uniprot ID:RS3A_HUMAN; ENSEMBL ID: ENSG00000145425; HGNC ID: 10421
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:4 results
Experimental PTM Sites from dbPTM:4 results
Predicted PTM Sites by profile HMM from dbPTM:5 results

Location(AA)	Modification
34	N6-acetyllysine.
249	N6-acetyllysine.
256	Phosphotyrosine.
263	Phosphoserine.

Location(AA)	Modification	Resource
55	Phosphothreonine(PKA)	HMM predict
139	S-palmitoyl	HMM predict
154	Phosphoserine(PKG)	HMM predict
238	Phosphoserine(ATM)	HMM predict
256	Phosphotyrosine(INSR)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001006
Location:chr4 152240203-152245251
strand:+

Upstream the gene:8 results
Downstream the gene:0 results
Inside the gene:10 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	152239865	152240341	476	101
CTCF	CD4	SISSRdata	152239865	152240341	476	101
CTCF	G2	GSE9613	152239682	152240660	978	33
Oct1	H2O2-Hela	GSE14283	152233547	152233594	47	6633
Oct1	Hela	GSE14283	152233547	152233593	46	6634
Rb	Growing	GSE19898	152240067	152240194	127	73
Rb	Quiescent	GSE19898	152240018	152240287	269	51
p130	Quiescent	GSE19898	152239851	152240243	392	157

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	152239580	152241018	1438	0
H3K4me3	colorectal	cancer	152240478	152241226	748	0
H3ac	HepG2	E	152240269	152242088	1819	0
H3ac	HepG2	E	152242772	152243342	570	0
P300	T30-glioblastoma	GSE21026	152239635	152240983	1348	0
PHF8	293T	GSE20725	152239665	152240809	1144	0
PHF8	Hs68plusFBS	GSE20725	152239546	152241205	1659	0
TAF	Hela	GSE8489	152240005	152242088	2083	0
TAF	k562	GSE8489	152240005	152242088	2083	0
hScc1	Bcell	GSE12603	152239894	152240696	802	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
20322	mRNA	RPS3A	chr4	152378367	152383407	209	EST		chr4	152381507	152399568	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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