AutismKB 2.0

Annotation Detail for RRBP1


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Basic Information Top
Gene Symbol:RRBP1 ( DKFZp586A1420,ES/130,ES130,FLJ36146,MGC157720,MGC157721,hES )
Gene Full Name: ribosome binding protein 1 homolog 180kDa (dog)
Band: 20p12.1
Quick LinksEntrez ID:6238; OMIM: 601418; Uniprot ID:RRBP1_HUMAN; ENSEMBL ID: ENSG00000125844; HGNC ID: 10448
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
255Phosphothreonine.
275Phosphothreonine.
533Phosphoserine.
583Phosphoserine.
615Phosphoserine.
1276Phosphoserine.
1277Phosphoserine.
Location(AA) Modifications Resource
225PhosphothreoninePhospho.ELM 6.0
255Phosphothreonine.Swiss-Prot 53.0
274PhosphothreoninePhospho.ELM 6.0
275Phosphothreonine.Swiss-Prot 53.0
275PhosphothreoninePhospho.ELM 6.0
533Phosphoserine.Swiss-Prot 53.0
533PhosphoserinePhospho.ELM 6.0
583Phosphoserine.Swiss-Prot 53.0
583PhosphoserinePhospho.ELM 6.0
615PhosphoserinePhospho.ELM 6.0
615Phosphoserine.Swiss-Prot 53.0
1277PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
38Phosphotyrosine(EGFR)HMM predict
65Phosphothreonine(PKC)HMM predict
72Phosphothreonine(PKC)HMM predict
91N-linkedHMM predict
110Phosphothreonine(CDK)HMM predict
123O-linkedHMM predict
135Phosphoserine(ATM)HMM predict
135Phosphoserine(CDK)HMM predict
135Phosphoserine(CDC2)HMM predict
191O-linkedHMM predict
275Phosphothreonine(CDC2)HMM predict
287Phosphothreonine(PKC)HMM predict
615Phosphoserine(CDC2)HMM predict
631PhosphoserineHMM predict
689Phosphothreonine(PKA)HMM predict
814Phosphoserine(IKK)HMM predict
876Phosphoserine(CK1)HMM predict
920Phosphoserine(CK1)HMM predict
994Phosphoserine(ATM)HMM predict
1044Phosphoserine(CK1)HMM predict
1052Phosphoserine(CK1)HMM predict
1081N-linkedHMM predict
1148Phosphoserine(CK2)HMM predict
1173Phosphothreonine(PKC)HMM predict
1233Phosphoserine(ATM)HMM predict
1235Phosphoserine(ATM)HMM predict
1276O-linkedHMM predict
1277O-linkedHMM predict
1277Phosphoserine(ATM)HMM predict
1277Phosphoserine(CDC2)HMM predict
1320Phosphothreonine(PKC)HMM predict
1341Phosphoserine(CK1)HMM predict
1387Phosphothreonine(PKC)HMM predict
1403Phosphoserine(CK1)HMM predict
1404Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001042576
  • Location:chr20 17542322-17610927
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 17610649 17611710 1061 252
H3ac HepG2E 17611502 17612332 830 990
PHF8 293TGSE20725 17610588 17611832 1244 283
PHF8 HeLaGSE20725 17610246 17611622 1376 7
Rb SenescentGSE19898 17610945 17611632 687 361
p130 SenescentGSE19898 17611206 17611427 221 389
p130 shRbSenescentGSE19898 17611232 17611636 404 507
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 17539774 17540628 854 2122
hScc1 BcellGSE12603 17541756 17542069 313 410
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 17546142 17546430 288 0
CTCF CD4GSE12889 17577935 17578048 113 0
CTCF CD4GSE12889 17583700 17583822 122 0
CTCF CD4SISSRdata 17546142 17546430 288 0
CTCF CD4SISSRdata 17577935 17578048 113 0
CTCF CD4SISSRdata 17583700 17583822 122 0
CTCF G2GSE9613 17546118 17547043 925 0
CTCF G2GSE9613 17558284 17558633 349 0
CTCF G2GSE9613 17609903 17611607 1704 0
ER MCF7GSE19013 17574267 17575443 1176 0
Fos K562GSE19551 17584548 17584809 261 0
H3ac HepG2E 17590938 17591254 316 0
H3ac HepG2E 17608316 17609462 1146 0
Nanog hESGSE18292 17584433 17584753 320 0
PHF8 Hs68plusFBSGSE20725 17609929 17611083 1154 0
Rb shRbQuiescentGSE19898 17570030 17570274 244 0
STAT1 HeLaGSE12782 17577383 17578583 1200 0
STAT1 HeLaGSE12783 17577460 17578543 1083 0
STAT1 IFNSISSRdata 17577671 17578242 571 0
TFAP2C MCF7GSE21234 17545917 17547071 1154 0
hScc1 BcellGSE12603 17544345 17544544 199 0
hScc1 BcellGSE12603 17545453 17546737 1284 0
hScc1 BcellGSE12603 17549530 17549705 175 0
hScc1 BcellGSE12603 17550142 17550494 352 0
hScc1 BcellGSE12603 17553834 17554584 750 0
hScc1 BcellGSE12603 17556778 17557455 677 0
hScc1 BcellGSE12603 17557758 17558633 875 0
hScc1 BcellGSE12603 17562649 17563018 369 0
hScc1 BcellGSE12603 17563926 17564698 772 0
hScc1 BcellGSE12603 17565498 17565857 359 0
hScc1 BcellGSE12603 17568853 17569017 164 0
hScc1 BcellGSE12603 17570232 17570496 264 0
hScc1 BcellGSE12603 17585859 17586110 251 0
hScc1 BcellGSE12603 17609150 17611465 2315 0
hScc1 CdLSGSE12603 17545971 17546623 652 0
hScc1 G2GSE9613 17545971 17546810 839 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 15183728
hsa-let-7a hsa-let-7a-2 11 15183728
hsa-let-7a hsa-let-7a-3 22 15183728
hsa-let-7a* hsa-let-7a-1 9 15183728
hsa-let-7a* hsa-let-7a-3 22 15183728
hsa-miR-103 hsa-mir-103-2 20 15183728
hsa-miR-103 hsa-mir-103-1 5 15183728
hsa-miR-124 hsa-mir-124-1 8 15183728
hsa-miR-124 hsa-mir-124-2 8 15183728
hsa-miR-124 hsa-mir-124-3 20 15183728
hsa-miR-124* hsa-mir-124-1 8 15183728
hsa-miR-124* hsa-mir-124-2 8 15183728
hsa-miR-124* hsa-mir-124-3 20 15183728
hsa-miR-125a-3p hsa-mir-125a 19 19608752
hsa-miR-125a-5p hsa-mir-125a 19 19608752
hsa-miR-130a hsa-mir-130a 11 15183728
hsa-miR-130a* hsa-mir-130a 11 15183728
hsa-miR-134 hsa-mir-134 14 15183728
hsa-miR-135a hsa-mir-135a-1 3 15183728
hsa-miR-135a hsa-mir-135a-2 12 15183728
hsa-miR-135a* hsa-mir-135a-1 3 15183728
hsa-miR-136 hsa-mir-136 14 15183728
hsa-miR-136* hsa-mir-136 14 15183728
hsa-miR-154 hsa-mir-154 14 15183728
hsa-miR-154* hsa-mir-154 14 15183728
hsa-miR-16 hsa-mir-16-1 13 15183728
hsa-miR-16 hsa-mir-16-2 3 15183728
hsa-miR-16-1* hsa-mir-16-1 13 15183728
hsa-miR-16-2* hsa-mir-16-2 3 15183728
hsa-miR-17 hsa-mir-17 13 15183728
hsa-miR-17* hsa-mir-17 13 15183728
hsa-miR-19b hsa-mir-19b-1 13 15183728
hsa-miR-19b hsa-mir-19b-2 X 15183728
hsa-miR-19b-1* hsa-mir-19b-1 13 15183728
hsa-miR-19b-2* hsa-mir-19b-2 X 15183728
hsa-miR-200c hsa-mir-200c 12 19229866
hsa-miR-200c hsa-mir-200c 12 15183728
hsa-miR-200c* hsa-mir-200c 12 19229866
hsa-miR-200c* hsa-mir-200c 12 15183728
hsa-miR-21 hsa-mir-21 17 15183728
hsa-miR-21* hsa-mir-21 17 15183728
hsa-miR-222 hsa-mir-222 X 15183728
hsa-miR-222* hsa-mir-222 X 15183728
hsa-miR-26a hsa-mir-26a-1 3 15183728
hsa-miR-26a hsa-mir-26a-2 12 15183728
hsa-miR-26a-1* hsa-mir-26a-1 3 15183728
hsa-miR-26a-2* hsa-mir-26a-2 12 15183728
hsa-miR-296-3p hsa-mir-296 20 15183728
hsa-miR-296-5p hsa-mir-296 20 15183728
hsa-miR-29a hsa-mir-29a 7 15183728
hsa-miR-29a* hsa-mir-29a 7 15183728
hsa-miR-29b hsa-mir-29b-1 7 15183728
hsa-miR-29b hsa-mir-29b-2 1 15183728
hsa-miR-29b-1* hsa-mir-29b-1 7 15183728
hsa-miR-29b-2* hsa-mir-29b-2 1 15183728
hsa-miR-301a hsa-mir-301a 17 15183728
hsa-miR-302a hsa-mir-302a 4 19309508
hsa-miR-302a hsa-mir-302a 4 20870751
hsa-miR-302a hsa-mir-302a 4 15183728
hsa-miR-302a* hsa-mir-302a 4 19309508
hsa-miR-302a* hsa-mir-302a 4 20870751
hsa-miR-302a* hsa-mir-302a 4 15183728
hsa-miR-302b hsa-mir-302b 4 19309508
hsa-miR-302b hsa-mir-302b 4 18665260
hsa-miR-302b hsa-mir-302b 4 20870751
hsa-miR-302b hsa-mir-302b 4 15183728
hsa-miR-302b* hsa-mir-302b 4 19309508
hsa-miR-302b* hsa-mir-302b 4 18665260
hsa-miR-302b* hsa-mir-302b 4 20870751
hsa-miR-302b* hsa-mir-302b 4 15183728
hsa-miR-302c hsa-mir-302c 4 19309508
hsa-miR-302c hsa-mir-302c 4 20870751
hsa-miR-302c hsa-mir-302c 4 15183728
hsa-miR-302c* hsa-mir-302c 4 19309508
hsa-miR-302c* hsa-mir-302c 4 20870751
hsa-miR-302c* hsa-mir-302c 4 15183728
hsa-miR-302d hsa-mir-302d 4 19309508
hsa-miR-302d hsa-mir-302d 4 19229866
hsa-miR-302d hsa-mir-302d 4 20870751
hsa-miR-302d hsa-mir-302d 4 15183728
hsa-miR-302d* hsa-mir-302d 4 19309508
hsa-miR-302d* hsa-mir-302d 4 19229866
hsa-miR-302d* hsa-mir-302d 4 20870751
hsa-miR-302d* hsa-mir-302d 4 15183728
hsa-miR-302f hsa-mir-302f 0 19309508
hsa-miR-302f hsa-mir-302f 0 20870751
hsa-miR-367 hsa-mir-367 4 19229866
hsa-miR-367 hsa-mir-367 4 15183728
hsa-miR-367* hsa-mir-367 4 19229866
hsa-miR-367* hsa-mir-367 4 15183728
hsa-miR-369-3p hsa-mir-369 14 15183728
hsa-miR-369-5p hsa-mir-369 14 15183728
hsa-miR-370 hsa-mir-370 14 15183728
hsa-miR-371-3p hsa-mir-371 19 15183728
hsa-miR-371-5p hsa-mir-371 19 15183728
hsa-miR-372 hsa-mir-372 19 19229866
hsa-miR-372 hsa-mir-372 19 15183728
hsa-miR-373 hsa-mir-373 19 15183728
hsa-miR-373* hsa-mir-373 19 15183728
hsa-miR-374a hsa-mir-374a X 15183728
hsa-miR-374a* hsa-mir-374a X 15183728
hsa-miR-376c hsa-mir-376c 0 15183728
hsa-miR-520b hsa-mir-520b 19 19309508
hsa-miR-92a hsa-mir-92a-1 13 15183728
hsa-miR-92a hsa-mir-92a-2 X 15183728
hsa-miR-92a-1* hsa-mir-92a-1 13 15183728
hsa-miR-92a-2* hsa-mir-92a-2 X 15183728
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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