AutismKB 2.0

Annotation Detail for CLIP1


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Basic Information Top
Gene Symbol:CLIP1 ( CLIP,CLIP-170,CLIP170,CYLN1,MGC131604,RSN )
Gene Full Name: CAP-GLY domain containing linker protein 1
Band: 12q24.31
Quick LinksEntrez ID:6249; OMIM: 179838; Uniprot ID:CLIP1_HUMAN; ENSEMBL ID: ENSG00000130779; HGNC ID: 10461
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
45Phosphothreonine.
48Phosphoserine.
140Phosphothreonine.
143Phosphoserine.
147Phosphoserine.
182Phosphothreonine.
193Phosphoserine.
195Phosphoserine.
197Phosphoserine.
200Phosphoserine.
204Phosphoserine.
833Phosphothreonine.
937Phosphoserine (By similarity).
1364Phosphoserine.
1432CCHC-box.
Location(AA) Modifications Resource
182Phosphothreonine.Swiss-Prot 53.0
182PhosphothreoninePhospho.ELM 6.0
195Phosphoserine.Swiss-Prot 53.0
200Phosphoserine.Swiss-Prot 53.0
200PhosphoserinePhospho.ELM 6.0
204Phosphoserine.Swiss-Prot 53.0
204PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
25Phosphothreonine(MAPK)HMM predict
25O-linkedHMM predict
39Phosphoserine(CK2)HMM predict
44Phosphoserine(CK1)HMM predict
44Phosphoserine(IKK)HMM predict
45Phosphothreonine(MAPK)HMM predict
45Phosphothreonine(CDK)HMM predict
47Phosphoserine(CK1)HMM predict
139Phosphothreonine(PKC)HMM predict
146O-linkedHMM predict
147O-linkedHMM predict
147Phosphoserine(CDC2)HMM predict
151O-linkedHMM predict
152Phosphoserine(IKK)HMM predict
155O-linkedHMM predict
155Phosphoserine(IKK)HMM predict
158O-linkedHMM predict
160Phosphoserine(CDK)HMM predict
160Phosphoserine(ATM)HMM predict
160Phosphoserine(CDC2)HMM predict
160Phosphoserine(IKK)HMM predict
162Phosphoserine(CK1)HMM predict
162Phosphoserine(IKK)HMM predict
163Phosphothreonine(MAPK)HMM predict
163O-linkedHMM predict
182PhosphothreonineHMM predict
182Phosphothreonine(MAPK)HMM predict
187N-linkedHMM predict
198N-linkedHMM predict
302O-linkedHMM predict
306O-linkedHMM predict
310Phosphoserine(CDC2)HMM predict
310PhosphoserineHMM predict
310Phosphoserine(IKK)HMM predict
312PhosphoserineHMM predict
312Phosphoserine(IKK)HMM predict
315O-linkedHMM predict
315Phosphoserine(IKK)HMM predict
320Phosphoserine(CK1)HMM predict
321Phosphoserine(ATM)HMM predict
327O-linkedHMM predict
348Phosphoserine(PKG)HMM predict
494Phosphothreonine(PKC)HMM predict
524Phosphoserine(PKG)HMM predict
588Phosphoserine(PKG)HMM predict
596Phosphoserine(CK1)HMM predict
659SulfotyrosineHMM predict
698Phosphoserine(CK1)HMM predict
750N-linkedHMM predict
772Phosphoserine(PKG)HMM predict
804Phosphoserine(CK2)HMM predict
809Phosphoserine(CK1)HMM predict
827N-linkedHMM predict
829Phosphoserine(CK1)HMM predict
862Phosphoserine(IKK)HMM predict
931Phosphoserine(ATM)HMM predict
978Phosphoserine(ATM)HMM predict
998Phosphoserine(PKG)HMM predict
1023Phosphoserine(CK1)HMM predict
1023Phosphoserine(IKK)HMM predict
1027Phosphothreonine(CK2)HMM predict
1193Phosphoserine(CK1)HMM predict
1223O-linkedHMM predict
1223Phosphoserine(IKK)HMM predict
1232Phosphothreonine(CK2)HMM predict
1260Phosphoserine(IKK)HMM predict
1291Phosphoserine(PKG)HMM predict
1292Phosphoserine(CDC2)HMM predict
1292PhosphoserineHMM predict
1293Phosphoserine(CDC2)HMM predict
1351Phosphotyrosine(INSR)HMM predict
1351Phosphotyrosine(Syk)HMM predict
1351SulfotyrosineHMM predict
1389O-linkedHMM predict
1411CysteineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_002956
  • Location:chr12 121321933-121473068
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 121473298 121473718 420 440
FOXA1 MCF7GSE15244 121481831 121482184 353 8939
FoxA1 MCF7MACSdata 121481715 121482231 516 8905
RARA MCF7GSE15244 121481831 121482184 353 8939
RARG MCF7GSE15244 121481831 121482184 353 8939
hScc1 BcellGSE12603 121473298 121473545 247 353
hScc1 G2GSE9613 121473298 121474145 847 653
p130 shRbSenescentGSE19898 121488224 121488460 236 15274
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
USF1 HepG2E 121319350 121319941 591 2288
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 121449566 121451769 2203 0
CTCF CD4GSE12889 121386506 121386913 407 0
CTCF CD4GSE12889 121406717 121407020 303 0
CTCF CD4GSE12889 121450057 121450277 220 0
CTCF CD4GSE12889 121472635 121472806 171 0
CTCF CD4SISSRdata 121386506 121386913 407 0
CTCF CD4SISSRdata 121406717 121407020 303 0
CTCF CD4SISSRdata 121450057 121450277 220 0
CTCF CD4SISSRdata 121472635 121472806 171 0
CTCF G2GSE9613 121354324 121354596 272 0
CTCF G2GSE9613 121356835 121357409 574 0
CTCF G2GSE9613 121385834 121385980 146 0
CTCF G2GSE9613 121386355 121386806 451 0
CTCF G2GSE9613 121421911 121422274 363 0
CTCF G2GSE9613 121436168 121436469 301 0
CTCF G2GSE9613 121449810 121450512 702 0
CTCF G2GSE9613 121453518 121453774 256 0
CTCF G2GSE9613 121472275 121472963 688 0
FOXA1 DLD1GSE12801 121418666 121418932 266 0
FOXA1 DLD1GSE12801 121450924 121451378 454 0
FOXA1 MCF7GSE15244 121449997 121451378 1381 0
FOXA1 MCF7GSE15244 121471773 121472313 540 0
Fos K562GSE19551 121449733 121451466 1733 0
Fos K562GSE19551 121460565 121460832 267 0
FoxA1 MCF7MACSdata 121418985 121419200 215 0
FoxA1 MCF7MACSdata 121450981 121451347 366 0
GATA3 MCF7GSE15244 121449849 121450541 692 0
H3K4me2 HCT116GSE10453 121470870 121471128 258 0
H3ac HepG2E 121470870 121471128 258 0
H3ac HepG2E 121471773 121472313 540 0
KLF4 hESGSE17917 121367927 121368089 162 0
Myc K562GSE19551 121417293 121417721 428 0
NFkBII GM12878GSE19485 121466230 121467636 1406 0
NFkBII GM12892GSE19485 121466170 121467615 1445 0
P300 T30-glioblastomaGSE21026 121449792 121451763 1971 0
PHF8 293TGSE20725 121472031 121473561 1530 0
PHF8 Hs68plusFBSGSE20725 121471714 121473978 2264 0
PolII HeLaGSE12783 121449446 121451528 2082 0
RARA MCF7GSE15244 121449884 121451378 1494 0
RARA MCF7GSE15244 121470870 121471128 258 0
RARA MCF7GSE15244 121471773 121472378 605 0
RARG MCF7GSE15244 121378055 121378383 328 0
RARG MCF7GSE15244 121449884 121451378 1494 0
RARG MCF7GSE15244 121470870 121471128 258 0
RARG MCF7GSE15244 121471773 121472313 540 0
Rb SenescentGSE19898 121450103 121450266 163 0
TAF HelaGSE8489 121450850 121451378 528 0
TAF HelaGSE8489 121470870 121471128 258 0
TAF k562GSE8489 121450058 121451378 1320 0
TFAP2C MCF7GSE21234 121355427 121355876 449 0
hScc1 BcellGSE12603 121406378 121406704 326 0
hScc1 BcellGSE12603 121439408 121439540 132 0
hScc1 BcellGSE12603 121449810 121450703 893 0
hScc1 BcellGSE12603 121471773 121472963 1190 0
hScc1 CdLSGSE12603 121386427 121387085 658 0
hScc1 CdLSGSE12603 121406486 121406704 218 0
hScc1 CdLSGSE12603 121449810 121451015 1205 0
hScc1 CdLSGSE12603 121472191 121472963 772 0
hScc1 G2GSE9613 121449810 121450404 594 0
p130 QuiescentGSE19898 121451003 121451211 208 0
p130 SenescentGSE19898 121326903 121327270 367 0
p130 SenescentGSE19898 121450763 121451376 613 0
p130 shRbQuiescentGSE19898 121450481 121451167 686 0
p130 shRbSenescentGSE19898 121450811 121451281 470 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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