AutismKB 2.0

Annotation Detail for RTN1


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Basic Information Top
Gene Symbol:RTN1 ( MGC133250,NSP )
Gene Full Name: reticulon 1
Band: 14q23.1
Quick LinksEntrez ID:6252; OMIM: 600865; Uniprot ID:RTN1_HUMAN; ENSEMBL ID: ENSG00000139970; HGNC ID: 10467
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
350Phosphoserine (By similarity).
352Phosphoserine.
487Phosphoserine.
Location(AA) Modifications Resource
350Phosphoserine (By similarity).Swiss-Prot 53.0
352Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
34Phosphothreonine(CDC2)HMM predict
39Phosphothreonine(MAPK)HMM predict
48O-linkedHMM predict
71PhosphoserineHMM predict
71Phosphoserine(IKK)HMM predict
86O-linkedHMM predict
96O-linkedHMM predict
139PhosphoserineHMM predict
145Phosphothreonine(MAPK)HMM predict
145O-linkedHMM predict
149O-linkedHMM predict
300Phosphothreonine(MAPK)HMM predict
321Phosphoserine(CK2)HMM predict
330O-linkedHMM predict
332PhosphothreonineHMM predict
332O-linkedHMM predict
332Phosphothreonine(MAPK)HMM predict
332Phosphothreonine(CDK)HMM predict
335O-linkedHMM predict
338Phosphothreonine(CDK)HMM predict
341O-linkedHMM predict
345Phosphoserine(ATM)HMM predict
352Phosphoserine(CK2)HMM predict
404Phosphoserine(CK2)HMM predict
405Phosphoserine(CK1)HMM predict
408Phosphoserine(CK2)HMM predict
443Phosphoserine(ATM)HMM predict
443O-linkedHMM predict
443Phosphoserine(CDC2)HMM predict
443Phosphoserine(CDK)HMM predict
446Phosphoserine(IKK)HMM predict
446Phosphoserine(MAPK)HMM predict
446Phosphoserine(CDC2)HMM predict
477Phosphoserine(IKK)HMM predict
477Phosphoserine(CK1)HMM predict
525SulfotyrosineHMM predict
558Phosphoserine(CK1)HMM predict
559Phosphoserine(CK1)HMM predict
560Phosphoserine(IKK)HMM predict
561N-linkedHMM predict
563Phosphoserine(CDC2)HMM predict
563Phosphoserine(IKK)HMM predict
668Phosphoserine(ATM)HMM predict
684N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021136
  • Location:chr14 59132446-59407309
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 59407633 59408279 646 647
TFAP2C MCF7GSE21234 59407586 59408179 593 573
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF JurkatGSE12889 59285918 59286236 318 0
CTCF G2GSE9613 59406952 59407421 469 0
FoxA1 MCF7MACSdata 59324760 59324905 145 0
Nanog ESGSE20650 59348376 59348754 378 0
Oct1 H2O2-HelaGSE14283 59311417 59311458 41 0
Oct1 H2O2-HelaGSE14283 59334565 59334594 29 0
Oct1 HelaGSE14283 59268946 59268973 27 0
Oct1 HelaGSE14283 59311384 59311456 72 0
Oct1 HelaGSE14283 59311494 59311528 34 0
Oct1 HelaGSE14283 59329687 59329715 28 0
Oct1 HelaGSE14283 59334565 59334597 32 0
Oct4 hESGSE17917 59355870 59356118 248 0
Sox2 hESGSE18292 59348451 59348804 353 0
hScc1 BcellGSE12603 59406707 59407089 382 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7981 mRNA chr14 59250125 59252296 2171 mRNA RTN1 chr14 59132446 59264184 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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