AutismKB 2.0

Annotation Detail for RXRB


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Basic Information Top
Gene Symbol:RXRB ( DAUDI6,H-2RIIBP,MGC1831,NR2B2,RCoR-1 )
Gene Full Name: retinoid X receptor, beta
Band: 6p21.32
Quick LinksEntrez ID:6257; OMIM: 180246; Uniprot ID:RXRB_HUMAN; ENSEMBL ID: ENSG00000204231; HGNC ID: 10478
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
60Phosphothreonine(MAPK)HMM predict
60O-linkedHMM predict
60Phosphothreonine(CDC2)HMM predict
80PhosphoserineHMM predict
80Phosphoserine(PKG)HMM predict
82Phosphoserine(CDK)HMM predict
82Phosphoserine(IKK)HMM predict
82Phosphoserine(ATM)HMM predict
85Phosphoserine(IKK)HMM predict
86Phosphoserine(CK1)HMM predict
86O-linkedHMM predict
99Phosphoserine(CDK)HMM predict
99Phosphoserine(CDC2)HMM predict
99O-linkedHMM predict
108O-linkedHMM predict
108O-linkedHMM predict
112O-linkedHMM predict
116O-linkedHMM predict
131O-linkedHMM predict
131Phosphoserine(CDC2)HMM predict
137O-linkedHMM predict
142O-linkedHMM predict
154O-linkedHMM predict
159Phosphoserine(CDC2)HMM predict
163N-linkedHMM predict
239Phosphotyrosine(INSR)HMM predict
328O-linkedHMM predict
330O-linkedHMM predict
331Phosphoserine(ATM)HMM predict
331O-linkedHMM predict
436PhosphothreonineHMM predict
456N-linkedHMM predict
468Phosphotyrosine(EGFR)HMM predict
468Phosphotyrosine(SRC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021976
  • Location:chr6 33269343-33276409
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 33275377 33277530 2153 44
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 33268952 33269402 450 167
hScc1 BcellGSE12603 33268830 33269368 538 245
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 33273253 33273540 287 0
CTCF CD4SISSRdata 33273253 33273540 287 0
CTCF G2GSE9613 33273050 33274036 986 0
CTCF G2GSE9613 33275571 33276213 642 0
H3ac HepG2E 33273591 33274001 410 0
H3ac HepG2E 33274689 33275674 985 0
P300 T30-glioblastomaGSE21026 33275256 33277306 2050 0
PHF8 293TGSE20725 33275386 33276916 1530 0
PHF8 HeLaGSE20725 33275537 33276554 1017 0
RARA MCF7GSE15244 33270925 33271657 732 0
hScc1 BcellGSE12603 33273050 33273522 472 0
hScc1 CdLSGSE12603 33273050 33273746 696 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22458 EST chr6 33276096 33278382 212 mRNA RXRB chr6 33269343 33276410Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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