AutismKB 2.0

Annotation Detail for CCL20


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Basic Information Top
Gene Symbol:CCL20 ( CKb4,LARC,MIP-3a,MIP3A,SCYA20,ST38 )
Gene Full Name: chemokine (C-C motif) ligand 20
Band: 2q36.3
Quick LinksEntrez ID:6364; OMIM: 601960; Uniprot ID:CCL20_HUMAN; ENSEMBL ID: ENSG00000115009; HGNC ID: 10619
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004591
  • Location:chr2 228386813-228390493
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
USF1 HepG2E 228385935 228386888 953 402
USF2 HepG2E 228385935 228387519 1584 87
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 228390791 228392159 1368 982
HIF1 HypoHepG2 228391870 228392238 368 1561
P300 T30-glioblastomaGSE21026 228390510 228392287 1777 905
USF2 HepG2E 228391870 228392238 368 1561
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 228386888 228387519 631 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018