Annotation Detail for SDC4
Basic Information Top
| Gene Symbol: | SDC4 ( MGC22217,SYND4 ) |
|---|---|
| Gene Full Name: | syndecan 4 |
| Band: | 20q13.12 |
| Quick Links | Entrez ID:6385; OMIM: 600017; Uniprot ID:SDC4_HUMAN; ENSEMBL ID: ENSG00000124145; HGNC ID: 10661 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 39 | O-linked (Xyl...) (heparan sulfate) (By | |
| 61 | O-linked (Xyl...) (heparan sulfate) | |
| 63 | O-linked (Xyl...) (heparan sulfate) | |
| 197 | Phosphotyrosine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 39 | O-linked (Xyl...) (heparan sulfate) (Bysimilarity). | Swiss-Prot 53.0 |
| 61 | O-linked (Xyl...) (heparan sulfate)(Potential). | Swiss-Prot 53.0 |
| 63 | O-linked (Xyl...) (heparan sulfate)(Potential). | Swiss-Prot 53.0 |
| 179 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 61 | Phosphoserine(CK2) | HMM predict |
| 95 | O-linked | HMM predict |
| 95 | Phosphoserine(CK1) | HMM predict |
| 95 | Phosphoserine(IKK) | HMM predict |
| 97 | Phosphoserine(IKK) | HMM predict |
| 97 | Phosphoserine(ATM) | HMM predict |
| 117 | Phosphoserine(MAPK) | HMM predict |
| 117 | Phosphoserine(CDC2) | HMM predict |
| 130 | Phosphoserine(IKK) | HMM predict |
| 132 | Phosphoserine(CK1) | HMM predict |
| 188 | Phosphotyrosine(EGFR) | HMM predict |
- RefSeq ID: NM_002999
- Location:chr20 43387344-43410477
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 43410430 | 43410698 | 268 | 87 |
| hScc1 | Bcell | GSE12603 | 43410430 | 43410698 | 268 | 87 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FoxA1 | MCF7 | MACSdata | 43383940 | 43384350 | 410 | 3200 |
| Myc | K562 | GSE19551 | 43385016 | 43385412 | 396 | 2131 |
| RARA | MCF7 | GSE15244 | 43384008 | 43384346 | 338 | 3168 |
| TFAP2C | MCF7 | GSE21234 | 43383768 | 43384228 | 460 | 3347 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | MCF7 | GSE19013 | 43402352 | 43402924 | 572 | 0 |
| FOXA1 | MCF7 | GSE15244 | 43403849 | 43406589 | 2740 | 0 |
| FOXA1 | eGFP | GSE10845 | 43403849 | 43406589 | 2740 | 0 |
| Fos | K562 | GSE19551 | 43405889 | 43406693 | 804 | 0 |
| H3ac | HepG2 | E | 43398708 | 43401498 | 2790 | 0 |
| H3ac | HepG2 | E | 43401880 | 43405530 | 3650 | 0 |
| H3ac | HepG2 | E | 43407349 | 43410179 | 2830 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 43398515 | 43400809 | 2294 | 0 |
| Pol2 | GM12878 | GSE19551 | 43410300 | 43410511 | 211 | 0 |
| RARA | MCF7 | GSE15244 | 43401880 | 43406589 | 4709 | 0 |
| Rb | Growing | GSE19898 | 43399715 | 43399942 | 227 | 0 |
| Sox2 | hES | GSE18292 | 43403071 | 43403311 | 240 | 0 |
| TFAP2C | MCF7 | GSE21234 | 43398470 | 43399207 | 737 | 0 |
| TFAP2C | MCF7 | GSE21234 | 43403643 | 43406809 | 3166 | 0 |
| TFAP2C | MCF7 | GSE21234 | 43407477 | 43408148 | 671 | 0 |
| TFAP2C | MCF7 | GSE21234 | 43408278 | 43408838 | 560 | 0 |
| TFAP2C | MCF7 | GSE21234 | 43409701 | 43410328 | 627 | 0 |
| USF1 | HepG2 | E | 43401928 | 43405530 | 3602 | 0 |
| USF2 | HepG2 | E | 43401928 | 43405562 | 3634 | 0 |
| hScc1 | Bcell | GSE12603 | 43398708 | 43399143 | 435 | 0 |
| hScc1 | Bcell | GSE12603 | 43399906 | 43400350 | 444 | 0 |
| p130 | Senescent | GSE19898 | 43399655 | 43400267 | 612 | 0 |
| p130 | shRbQuiescent | GSE19898 | 43398403 | 43399031 | 628 | 0 |
| p130 | shRbQuiescent | GSE19898 | 43399291 | 43400521 | 1230 | 0 |
| p130 | shRbQuiescent | GSE19898 | 43404344 | 43404740 | 396 | 0 |
| p130 | shRbSenescent | GSE19898 | 43399963 | 43400273 | 310 | 0 |
| p130 | shRbSenescent | GSE19898 | 43400966 | 43401214 | 248 | 0 |
| p63 | keratinocytes | GSE17611 | 43401023 | 43401880 | 857 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 192 | Unknown | MicroArray | miR-1 | SDC4 | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000124145 | "cardiac and skeletal muscles, cardiogenesis" | n_a | n_a | n_a | n_a |
Cis-Nats regulation