Annotation Detail for CXCL12
Basic Information Top
| Gene Symbol: | CXCL12 ( IRH,PBSF,SCYB12,SDF1,SDF1A,SDF1B,TLSF,TPAR1 ) |
|---|---|
| Gene Full Name: | chemokine (C-X-C motif) ligand 12 |
| Band: | 10q11.21 |
| Quick Links | Entrez ID:6387; OMIM: 600835; Uniprot ID:SDF1_HUMAN; ENSEMBL ID: ENSG00000107562; HGNC ID: 10672 |
| Relate to Another Database: | SFARIGene; denovo-db |
Post Translation Modification- RefSeq ID: NM_000609
- Location:chr10 44185612-44200547
- strand:-
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| KLF4 | hES | GSE17917 | 44177192 | 44177362 | 170 | 8336 |
| Oct1 | H2O2-Hela | GSE14283 | 44175900 | 44175929 | 29 | 9698 |
| Oct1 | Hela | GSE14283 | 44175900 | 44175929 | 29 | 9698 |
| Oct1 | Hela | GSE14283 | 44176757 | 44176784 | 27 | 8842 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | hES | GSE18292 | 44186469 | 44186925 | 456 | 0 |
| Sox2 | hES | GSE18292 | 44186505 | 44186915 | 410 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7a | hsa-let-7a-1 | 9 | 20975375 |
| hsa-let-7a | hsa-let-7a-2 | 11 | 20975375 |
| hsa-let-7a | hsa-let-7a-3 | 22 | 20975375 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 14697198 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 14697198 |
| hsa-miR-101 | hsa-mir-101-1 | 1 | 14697198 |
| hsa-miR-101 | hsa-mir-101-2 | 9 | 14697198 |
| hsa-miR-126 | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-126* | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-127-3p | hsa-mir-127 | 14 | 21343399 |
| hsa-miR-127-5p | hsa-mir-127 | 14 | 21343399 |
| hsa-miR-130a | hsa-mir-130a | 11 | 14697198 |
| hsa-miR-130a* | hsa-mir-130a | 11 | 14697198 |
| hsa-miR-140-3p | hsa-mir-140 | 16 | 18945805 |
| hsa-miR-140-5p | hsa-mir-140 | 16 | 18945805 |
| hsa-miR-155 | hsa-mir-155 | 21 | 20975375 |
| hsa-miR-155 | hsa-mir-155 | 21 | 20078880 |
| hsa-miR-155* | hsa-mir-155 | 21 | 20975375 |
| hsa-miR-155* | hsa-mir-155 | 21 | 20078880 |
| hsa-miR-19a | hsa-mir-19a | 13 | 14697198 |
| hsa-miR-19a* | hsa-mir-19a | 13 | 14697198 |
| hsa-miR-21 | hsa-mir-21 | 17 | 20975375 |
| hsa-miR-21* | hsa-mir-21 | 17 | 20975375 |
| hsa-miR-210 | hsa-mir-210 | 11 | 20975375 |
| hsa-miR-221 | hsa-mir-221 | X | 20975375 |
| hsa-miR-221* | hsa-mir-221 | X | 20975375 |
| hsa-miR-23a | hsa-mir-23a | 19 | 14697198 |
| hsa-miR-23a* | hsa-mir-23a | 19 | 14697198 |
| hsa-miR-23b | hsa-mir-23b | 9 | 14697198 |
| hsa-miR-23b* | hsa-mir-23b | 9 | 14697198 |
| hsa-miR-26a | hsa-mir-26a-1 | 3 | 14697198 |
| hsa-miR-26a | hsa-mir-26a-2 | 12 | 14697198 |
| hsa-miR-34a | hsa-mir-34a | 1 | 14697198 |
| hsa-miR-34a* | hsa-mir-34a | 1 | 14697198 |
| hsa-miR-7 | hsa-mir-7-1 | 9 | 20975375 |
| hsa-miR-7 | hsa-mir-7-2 | 15 | 20975375 |
| hsa-miR-7 | hsa-mir-7-3 | 19 | 20975375 |
| hsa-miR-886-3p | hsa-mir-886 | 0 | 21179442 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 562 | mRNA repression | TRUE | miR-23a | CXCL12 | in vitro reporter gene assay (Luciferase) | 14697198 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000107562 | n_a | n_a | n_a | "lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, sarcoma" |