AutismKB 2.0

Annotation Detail for RNF123


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Basic Information Top
Gene Symbol:RNF123 ( DKFZp686C2222,FLJ12565,KPC1,MGC163504 )
Gene Full Name: ring finger protein 123
Band: 3p21.31
Quick LinksEntrez ID:63891; OMIM: NA; Uniprot ID:RN123_HUMAN; ENSEMBL ID: ENSG00000164068; HGNC ID: 21148
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
18Phosphothreonine(PKC)HMM predict
27Phosphothreonine(PKA)HMM predict
44Phosphoserine(CK1)HMM predict
45Phosphoserine(CDK)HMM predict
46Phosphoserine(CDK)HMM predict
54Phosphothreonine(PKC)HMM predict
81Phosphoserine(ATM)HMM predict
81Phosphoserine(CK1)HMM predict
182N-linkedHMM predict
187N-linkedHMM predict
440Phosphoserine(CDC2)HMM predict
538N-linkedHMM predict
544N-linkedHMM predict
586Phosphotyrosine(Syk)HMM predict
586Phosphotyrosine(INSR)HMM predict
586Phosphotyrosine(SRC)HMM predict
694Phosphothreonine(CDK)HMM predict
694Phosphothreonine(CDC2)HMM predict
694Phosphothreonine(PKC)HMM predict
700Phosphoserine(PKG)HMM predict
700O-linkedHMM predict
701Phosphothreonine(PKC)HMM predict
807Phosphoserine(ATM)HMM predict
893Phosphotyrosine(EGFR)HMM predict
1103Phosphothreonine(PKA)HMM predict
1104Phosphoserine(PKA)HMM predict
1134Phosphothreonine(PKC)HMM predict
1211Phosphoserine(PKA)HMM predict
1218Phosphotyrosine(INSR)HMM predict
1245Phosphoserine(IKK)HMM predict
1269S-palmitoylHMM predict
1306N-linkedHMM predict
1307O-linkedHMM predict
1308O-linkedHMM predict
1308O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022064
  • Location:chr3 49701993-49733964
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 49701352 49702209 857 213
ETS1 JurkatGSE17954 49701136 49702814 1678 19
H3ac HepG2E 49699617 49704240 4623 65
P300 T30-glioblastomaGSE21026 49701200 49702449 1249 169
PHF8 Hs68minusFBSGSE20725 49701510 49702331 821 73
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 49715950 49716169 219 0
CTCF CD4SISSRdata 49715950 49716169 219 0
CTCF JurkatGSE12889 49715939 49716206 267 0
CTCF G2GSE9613 49709594 49710278 684 0
CTCF G2GSE9613 49711637 49712480 843 0
CTCF G2GSE9613 49712728 49714875 2147 0
CTCF G2GSE9613 49715753 49716646 893 0
CTCF G2GSE9613 49717719 49718110 391 0
CTCF G2GSE9613 49718701 49719821 1120 0
CTCF G2GSE9613 49725042 49725248 206 0
CTCF G2GSE9613 49725606 49726477 871 0
CTCF G2GSE9613 49727354 49728122 768 0
CTCF G2GSE9613 49733384 49733574 190 0
H3K4me2 HCT116GSE10453 49702499 49703336 837 0
H3K4me3 colorectalcancer 49701897 49703336 1439 0
H3ac HepG2E 49706847 49708637 1790 0
NRSF mAbJurkat 49702567 49703098 531 0
PHF8 HeLaGSE20725 49701530 49702469 939 0
Rb SenescentGSE19898 49716013 49716361 348 0
TFAP2C MCF7GSE21234 49728160 49728606 446 0
VDR GM10855-stimGSE22484 49729916 49737325 7409 0
VDR GM10861-UnstimGSE22484 49729497 49737769 8272 0
VDR GM10861-stimGSE22484 49729529 49737475 7946 0
hScc1 BcellGSE12603 49711841 49712198 357 0
hScc1 BcellGSE12603 49715878 49716415 537 0
hScc1 BcellGSE12603 49717618 49717921 303 0
hScc1 G2GSE9613 49715796 49716680 884 0
p130 shRbQuiescentGSE19898 49731809 49732508 699 0
p130 shRbSenescentGSE19898 49715930 49716333 403 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-155 hsa-mir-155 21 21355095
hsa-miR-155* hsa-mir-155 21 21355095
hsa-miR-221 hsa-mir-221 X 21355095
hsa-miR-221* hsa-mir-221 X 21355095
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18093 mRNA RNF123 chr3 49701993 49733965 30 mRNA GMPPB chr3 49733935 49736388Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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