Annotation Detail for SH2D4A
Basic Information Top
| Gene Symbol: | SH2D4A ( FLJ20967,SH2A ) |
|---|---|
| Gene Full Name: | SH2 domain containing 4A |
| Band: | 8p21.3 |
| Quick Links | Entrez ID:63898; OMIM: NA; Uniprot ID:SH24A_HUMAN; ENSEMBL ID: ENSG00000104611; HGNC ID: 26102 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 69 | N6-acetyllysine. | |
| 131 | Phosphotyrosine. | |
| 315 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 315 | Phosphoserine. | Swiss-Prot 53.0 |
| 315 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 10 | Phosphotyrosine(Syk) | HMM predict |
| 10 | Phosphotyrosine(Jak) | HMM predict |
| 51 | Phosphoserine(PKA) | HMM predict |
| 51 | Phosphoserine(PKG) | HMM predict |
| 116 | Phosphothreonine(CK2) | HMM predict |
| 164 | Phosphothreonine(PKC) | HMM predict |
| 172 | Phosphoserine(CK1) | HMM predict |
| 175 | Phosphoserine(CDC2) | HMM predict |
| 176 | Phosphoserine(CDC2) | HMM predict |
| 248 | Phosphoserine(PKG) | HMM predict |
| 257 | Phosphotyrosine(Syk) | HMM predict |
| 268 | Methylarginine | HMM predict |
| 275 | Phosphoserine(CDK) | HMM predict |
| 275 | Phosphoserine(CDC2) | HMM predict |
| 300 | Phosphotyrosine(EGFR) | HMM predict |
| 315 | Phosphoserine(CK1) | HMM predict |
| 353 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_022071
- Location:chr8 19215486-19297593
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3ac | HepG2 | E | 19214420 | 19214964 | 544 | 795 |
| hScc1 | Bcell | GSE12603 | 19215164 | 19215512 | 348 | 149 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 19273879 | 19274224 | 345 | 0 |
| CTCF | CD4 | SISSRdata | 19273879 | 19274224 | 345 | 0 |
| CTCF | G2 | GSE9613 | 19215228 | 19216329 | 1101 | 0 |
| CTCF | G2 | GSE9613 | 19235775 | 19235988 | 213 | 0 |
| CTCF | G2 | GSE9613 | 19248465 | 19248678 | 213 | 0 |
| CTCF | G2 | GSE9613 | 19274211 | 19274428 | 217 | 0 |
| CTCF | G2 | GSE9613 | 19277665 | 19277840 | 175 | 0 |
| FOXA1 | DLD1 | GSE12801 | 19246814 | 19247702 | 888 | 0 |
| FOXA1 | MCF7 | GSE15244 | 19228858 | 19229167 | 309 | 0 |
| FOXA1 | MCF7 | GSE15244 | 19246814 | 19247477 | 663 | 0 |
| Fos | K562 | GSE19551 | 19287659 | 19288098 | 439 | 0 |
| FoxA1 | MCF7 | MACSdata | 19247186 | 19247372 | 186 | 0 |
| NRSF | pAb | Jurkat | 19215228 | 19216464 | 1236 | 0 |
| PHF8 | HeLa | GSE20725 | 19214822 | 19216518 | 1696 | 0 |
| RARA | MCF7 | GSE15244 | 19228858 | 19229422 | 564 | 0 |
| RARA | MCF7 | GSE15244 | 19232758 | 19233163 | 405 | 0 |
| RARG | MCF7 | GSE15244 | 19228858 | 19229167 | 309 | 0 |
| STAT1 | HeLa | GSE12783 | 19287315 | 19288752 | 1437 | 0 |
| TFAP2C | MCF7 | GSE21234 | 19228462 | 19229065 | 603 | 0 |
| VDR | GM10855-stim | GSE22484 | 19219676 | 19221491 | 1815 | 0 |
| hScc1 | Bcell | GSE12603 | 19274211 | 19274534 | 323 | 0 |
| hScc1 | CdLS | GSE12603 | 19215481 | 19216329 | 848 | 0 |
| hScc1 | CdLS | GSE12603 | 19274211 | 19274465 | 254 | 0 |
| hScc1 | G2 | GSE9613 | 19215633 | 19216251 | 618 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 117 | Unknown | MicroArray | miR-1 | SH2D4A | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000104611 | "cardiac and skeletal muscles, cardiogenesis" | n_a | n_a | "epithelium, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, sarcoma" |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25133 | mRNA | SH2D4A | chr8 | 19215486 | 19297594 | 530 | EST | chr8 | 19276764 | 19277294 | Non-exonic Bidirectional (NOB) pairs | |