AutismKB 2.0

Annotation Detail for PRDM1


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Basic Information Top
Gene Symbol:PRDM1 ( BLIMP1,MGC118922,MGC118923,MGC118924,MGC118925,PRDI-BF1 )
Gene Full Name: PR domain containing 1, with ZNF domain
Band: 6q21
Quick LinksEntrez ID:639; OMIM: 603423; Uniprot ID:PRDM1_HUMAN; ENSEMBL ID: ENSG00000057657; HGNC ID: 9346
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
24Phosphotyrosine(INSR)HMM predict
87N-linkedHMM predict
93N-linkedHMM predict
131Phosphoserine(MAPK)HMM predict
184N-linkedHMM predict
213Phosphoserine(CK1)HMM predict
223N-linkedHMM predict
236Phosphoserine(CDC2)HMM predict
252PhosphoserineHMM predict
252Phosphoserine(PKA)HMM predict
252Phosphoserine(CDC2)HMM predict
252Phosphoserine(CAMK2)HMM predict
287Phosphotyrosine(INSR)HMM predict
291Phosphoserine(CDC2)HMM predict
291O-linkedHMM predict
295O-linkedHMM predict
295O-linkedHMM predict
297O-linkedHMM predict
298O-linkedHMM predict
298Phosphothreonine(MAPK)HMM predict
298O-linkedHMM predict
298Phosphothreonine(CDK)HMM predict
298O-linkedHMM predict
300Phosphoserine(CDC2)HMM predict
300Phosphoserine(CDK)HMM predict
300PhosphoserineHMM predict
300Phosphoserine(CDK)HMM predict
305Phosphoserine(CK1)HMM predict
306Phosphoserine(IKK)HMM predict
306Phosphoserine(CDK)HMM predict
315Phosphoserine(CDC2)HMM predict
318Phosphoserine(IKK)HMM predict
319Phosphoserine(CDC2)HMM predict
323O-linkedHMM predict
325Phosphoserine(CDC2)HMM predict
325O-linkedHMM predict
426N-linkedHMM predict
429O-linkedHMM predict
432O-linkedHMM predict
433Phosphoserine(IKK)HMM predict
475Phosphoserine(MAPK)HMM predict
477O-linkedHMM predict
478O-linkedHMM predict
478O-linkedHMM predict
480O-linkedHMM predict
480Phosphoserine(IKK)HMM predict
480Phosphoserine(CDC2)HMM predict
482O-linkedHMM predict
507Phosphoserine(ATM)HMM predict
519N-linkedHMM predict
605Phosphoserine(CK1)HMM predict
606Phosphoserine(PKA)HMM predict
646Phosphothreonine(PKC)HMM predict
700Phosphoserine(CK2)HMM predict
714Phosphoserine(CK1)HMM predict
776ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001198
  • Location:chr6 106640887-106664501
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 106637473 106637734 261 3284
CTCF G2GSE9613 106639236 106639609 373 1465
ER Fulvestrant-MCF7GSE14664 106624328 106624374 46 16537
Oct1 H2O2-HelaGSE14283 106624474 106624504 30 16399
Oct1 HelaGSE14283 106624332 106624365 33 16539
RNAII Tamoxifen-MCF7GSE14664 106627227 106627302 75 13623
hScc1 CdLSGSE12603 106639165 106639645 480 1483
hScc1 CdLSGSE12603 106640172 106641371 1199 116
hScc1 G2GSE9613 106640024 106641133 1109 309
p130 SenescentGSE19898 106637413 106637677 264 3343
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 106640646 106641133 487 0
H3K4me2 HCT116GSE10453 106651857 106652614 757 0
H3K4me3 colorectalcancer 106651820 106652759 939 0
Rb SenescentGSE19898 106642590 106643056 466 0
TAF k562GSE8489 106651820 106653136 1316 0
hScc1 BcellGSE12603 106652385 106652650 265 0
p130 shRbQuiescentGSE19898 106640773 106641205 432 0
p130 shRbQuiescentGSE19898 106642846 106643357 511 0
p130 shRbSenescentGSE19898 106642663 106642932 269 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 20966935
hsa-let-7a hsa-let-7a-2 11 20966935
hsa-let-7a hsa-let-7a-3 22 20966935
hsa-let-7a hsa-let-7a-1 9 20651244
hsa-let-7a hsa-let-7a-2 11 20651244
hsa-let-7a hsa-let-7a-3 22 20651244
hsa-let-7a hsa-let-7a-1 9 18583325
hsa-let-7a hsa-let-7a-2 11 18583325
hsa-let-7a hsa-let-7a-3 22 18583325
hsa-let-7a hsa-let-7a-1 9 19686677
hsa-let-7a hsa-let-7a-2 11 19686677
hsa-let-7a hsa-let-7a-3 22 19686677
hsa-let-7a hsa-let-7a-1 9 19578360
hsa-let-7a hsa-let-7a-2 11 19578360
hsa-let-7a hsa-let-7a-3 22 19578360
hsa-let-7a* hsa-let-7a-1 9 20966935
hsa-let-7a* hsa-let-7a-3 22 20966935
hsa-let-7a* hsa-let-7a-1 9 20651244
hsa-let-7a* hsa-let-7a-3 22 20651244
hsa-let-7a* hsa-let-7a-1 9 19686677
hsa-let-7a* hsa-let-7a-3 22 19686677
hsa-let-7a* hsa-let-7a-1 9 19578360
hsa-let-7a* hsa-let-7a-3 22 19578360
hsa-let-7b hsa-let-7b 22 20966935
hsa-let-7b hsa-let-7b 22 20651244
hsa-let-7b hsa-let-7b 22 19686677
hsa-let-7b hsa-let-7b 22 19578360
hsa-let-7b* hsa-let-7b 22 20966935
hsa-let-7b* hsa-let-7b 22 20651244
hsa-let-7b* hsa-let-7b 22 19686677
hsa-let-7b* hsa-let-7b 22 19578360
hsa-let-7c hsa-let-7c 21 20966935
hsa-let-7c hsa-let-7c 21 20651244
hsa-let-7c hsa-let-7c 21 20497960
hsa-let-7c hsa-let-7c 21 19686677
hsa-let-7c hsa-let-7c 21 19578360
hsa-let-7c* hsa-let-7c 21 20966935
hsa-let-7c* hsa-let-7c 21 20651244
hsa-let-7c* hsa-let-7c 21 20497960
hsa-let-7c* hsa-let-7c 21 19686677
hsa-let-7c* hsa-let-7c 21 19578360
hsa-let-7d hsa-let-7d 9 20966935
hsa-let-7d hsa-let-7d 9 20651244
hsa-let-7d hsa-let-7d 9 19686677
hsa-let-7d hsa-let-7d 9 19578360
hsa-let-7d* hsa-let-7d 9 20966935
hsa-let-7d* hsa-let-7d 9 20651244
hsa-let-7d* hsa-let-7d 9 19686677
hsa-let-7d* hsa-let-7d 9 19578360
hsa-let-7e hsa-let-7e 19 20966935
hsa-let-7e hsa-let-7e 19 20651244
hsa-let-7e hsa-let-7e 19 20497960
hsa-let-7e hsa-let-7e 19 19686677
hsa-let-7e hsa-let-7e 19 19578360
hsa-let-7e* hsa-let-7e 19 20966935
hsa-let-7e* hsa-let-7e 19 20651244
hsa-let-7e* hsa-let-7e 19 20497960
hsa-let-7e* hsa-let-7e 19 19686677
hsa-let-7e* hsa-let-7e 19 19578360
hsa-let-7f hsa-let-7f-1 9 20966935
hsa-let-7f hsa-let-7f-2 X 20966935
hsa-let-7f hsa-let-7f-1 9 20651244
hsa-let-7f hsa-let-7f-2 X 20651244
hsa-let-7f hsa-let-7f-1 9 19686677
hsa-let-7f hsa-let-7f-2 X 19686677
hsa-let-7f hsa-let-7f-1 9 19578360
hsa-let-7f hsa-let-7f-2 X 19578360
hsa-let-7f-1* hsa-let-7f-1 9 20966935
hsa-let-7f-1* hsa-let-7f-1 9 20651244
hsa-let-7f-1* hsa-let-7f-1 9 19686677
hsa-let-7f-1* hsa-let-7f-1 9 19578360
hsa-let-7f-2* hsa-let-7f-2 X 20966935
hsa-let-7f-2* hsa-let-7f-2 X 20651244
hsa-let-7f-2* hsa-let-7f-2 X 19686677
hsa-let-7f-2* hsa-let-7f-2 X 19578360
hsa-let-7g hsa-let-7g 3 20966935
hsa-let-7g hsa-let-7g 3 20651244
hsa-let-7g hsa-let-7g 3 19686677
hsa-let-7g hsa-let-7g 3 19578360
hsa-let-7g* hsa-let-7g 3 20966935
hsa-let-7g* hsa-let-7g 3 20651244
hsa-let-7g* hsa-let-7g 3 19686677
hsa-let-7g* hsa-let-7g 3 19578360
hsa-let-7i hsa-let-7i 12 20966935
hsa-let-7i hsa-let-7i 12 20651244
hsa-let-7i hsa-let-7i 12 19686677
hsa-let-7i hsa-let-7i 12 19578360
hsa-let-7i* hsa-let-7i 12 20966935
hsa-let-7i* hsa-let-7i 12 20651244
hsa-let-7i* hsa-let-7i 12 19686677
hsa-let-7i* hsa-let-7i 12 19578360
hsa-miR-125a-3p hsa-mir-125a 19 20497960
hsa-miR-125a-5p hsa-mir-125a 19 20497960
hsa-miR-125b hsa-mir-125b-1 11 21362569
hsa-miR-125b hsa-mir-125b-2 21 21362569
hsa-miR-125b hsa-mir-125b-1 11 20497960
hsa-miR-125b hsa-mir-125b-2 21 20497960
hsa-miR-125b hsa-mir-125b-1 11 19047678
hsa-miR-125b hsa-mir-125b-2 21 19047678
hsa-miR-125b-1* hsa-mir-125b-1 11 19047678
hsa-miR-127-3p hsa-mir-127 14 19530237
hsa-miR-127-5p hsa-mir-127 14 19530237
hsa-miR-17 hsa-mir-17 13 20014148
hsa-miR-17* hsa-mir-17 13 20014148
hsa-miR-223 hsa-mir-223 X 19047678
hsa-miR-223* hsa-mir-223 X 19047678
hsa-miR-30a hsa-mir-30a 6 20966935
hsa-miR-30a* hsa-mir-30a 6 20966935
hsa-miR-30b hsa-mir-30b 8 20966935
hsa-miR-30b* hsa-mir-30b 8 20966935
hsa-miR-30c hsa-mir-30c-2 6 20966935
hsa-miR-30c hsa-mir-30c-1 1 20966935
hsa-miR-30c-1* hsa-mir-30c-1 1 20966935
hsa-miR-30c-2* hsa-mir-30c-2 6 20966935
hsa-miR-30d hsa-mir-30d 8 20966935
hsa-miR-30d* hsa-mir-30d 8 20966935
hsa-miR-30e hsa-mir-30e 1 20966935
hsa-miR-30e* hsa-mir-30e 1 20966935
hsa-miR-9 hsa-mir-9-1 1 20966935
hsa-miR-9 hsa-mir-9-2 5 20966935
hsa-miR-9 hsa-mir-9-3 15 20966935
hsa-miR-9 hsa-mir-9-1 1 18583325
hsa-miR-9 hsa-mir-9-2 5 18583325
hsa-miR-9 hsa-mir-9-3 15 18583325
hsa-miR-9* hsa-mir-9-1 1 20966935
hsa-miR-92a hsa-mir-92a-1 13 20014148
hsa-miR-92a hsa-mir-92a-2 X 20014148
hsa-miR-99a hsa-mir-99a 21 20497960
hsa-miR-99a* hsa-mir-99a 21 20497960
hsa-miR-99b hsa-mir-99b 19 20497960
hsa-miR-99b* hsa-mir-99b 19 20497960
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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