AutismKB 2.0

Annotation Detail for CCDC90A


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Basic Information Top
Gene Symbol:CCDC90A ( C6orf79,FLJ20958 )
Gene Full Name: coiled-coil domain containing 90A
Band: 6p23
Quick LinksEntrez ID:63933; OMIM: NA; Uniprot ID:CC90A_HUMAN; ENSEMBL ID: ENSG00000050393; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001031713
  • Location:chr6 13898999-13922767
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TAF k562GSE8489 13923038 13923977 939 740
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 13897368 13897395 27 1618
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 13903152 13903741 589 0
CTCF CD4SISSRdata 13903152 13903741 589 0
CTCF G2GSE9613 13903208 13903751 543 0
CTCF G2GSE9613 13921840 13922861 1021 0
H3ac HepG2E 13920236 13920630 394 0
H3ac HepG2E 13921486 13921978 492 0
Myc K562GSE19551 13903372 13903648 276 0
Myc hESGSE17917 13922286 13922554 268 0
Oct1 HelaGSE14283 13901471 13901507 36 0
PHF8 293TGSE20725 13921594 13923234 1640 0
PHF8 HeLaGSE20725 13921843 13923274 1431 0
PHF8 Hs68plusFBSGSE20725 13921885 13923446 1561 0
RARA MCF7GSE15244 13904923 13905612 689 0
USF1 HepG2E 13921486 13921908 422 0
hScc1 BcellGSE12603 13903257 13903859 602 0
hScc1 BcellGSE12603 13921978 13922944 966 0
hScc1 CdLSGSE12603 13903134 13903859 725 0
hScc1 G2GSE9613 13903170 13903751 581 0
hScc1 G2GSE9613 13921804 13922944 1140 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018