AutismKB 2.0

Annotation Detail for SELL


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Basic Information Top
Gene Symbol:SELL ( CD62L,LAM1,LECAM1,LEU8,LNHR,LSEL,LYAM1,PLNHR,TQ1 )
Gene Full Name: selectin L
Band: 1q24.2
Quick LinksEntrez ID:6402; OMIM: 153240; Uniprot ID:LYAM1_HUMAN; ENSEMBL ID: ENSG00000188404; HGNC ID: 10720
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
60N-linked (GlcNAc...).
104N-linked (GlcNAc...).
177N-linked (GlcNAc...) (Potential).
232N-linked (GlcNAc...) (Potential).
246N-linked (GlcNAc...) (Potential).
271N-linked (GlcNAc...) (Potential).
311N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
60N-linked (GlcNAc...).Swiss-Prot 53.0
104N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
177N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
232N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
246N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
271N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
311N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
60N-linkedHMM predict
104N-linkedHMM predict
108Phosphothreonine(PKC)HMM predict
177N-linkedHMM predict
181N-linkedHMM predict
232N-linkedHMM predict
246N-linkedHMM predict
247C-linkedHMM predict
311N-linkedHMM predict
331Phosphotyrosine(EGFR)HMM predict
357ArginineHMM predict
364Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000655
  • Location:chr1 167926433-167947460
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 167947787 167948134 347 500
hScc1 BcellGSE12603 167947787 167948226 439 546
hScc1 CdLSGSE12603 167947787 167948226 439 546
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FoxA1 MCF7MACSdata 167926073 167926316 243 239
Nanog ESGSE20650 167917848 167918204 356 8408
Oct1 H2O2-HelaGSE14283 167910593 167910629 36 15823
Oct1 HelaGSE14283 167909760 167909799 39 16654
Stat6 IL-4-hr1GSE17850 167916266 167917126 860 9738
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 167928637 167929109 472 0
hScc1 BcellGSE12603 167930296 167930510 214 0
hScc1 CdLSGSE12603 167947051 167947392 341 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 21149603
hsa-let-7a hsa-let-7a-2 11 21149603
hsa-let-7a hsa-let-7a-3 22 21149603
hsa-let-7f hsa-let-7f-1 9 21149603
hsa-let-7f hsa-let-7f-2 X 21149603
hsa-miR-155 hsa-mir-155 21 21149603
hsa-miR-155* hsa-mir-155 21 21149603
hsa-miR-16 hsa-mir-16-1 13 21149603
hsa-miR-16 hsa-mir-16-2 3 21149603
hsa-miR-23a hsa-mir-23a 19 21149603
hsa-miR-23a* hsa-mir-23a 19 21149603
hsa-miR-23b hsa-mir-23b 9 21149603
hsa-miR-23b* hsa-mir-23b 9 21149603
hsa-miR-27a hsa-mir-27a 19 21149603
hsa-miR-27a* hsa-mir-27a 19 21149603
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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