AutismKB 2.0

Annotation Detail for SEMA3F


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Basic Information Top
Gene Symbol:SEMA3F ( SEMA-IV,SEMA4,SEMAK )
Gene Full Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Band: 3p21.31
Quick LinksEntrez ID:6405; OMIM: 601124; Uniprot ID:SEM3F_HUMAN; ENSEMBL ID: ENSG00000001617; HGNC ID: 10728
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
53N-linked (GlcNAc...) (Potential).
126N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
53N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
126N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
35Phosphoserine(PKG)HMM predict
53N-linkedHMM predict
97Phosphoserine(CDC2)HMM predict
126N-linkedHMM predict
167Phosphoserine(PKG)HMM predict
188Phosphotyrosine(Syk)HMM predict
289Phosphoserine(MAPK)HMM predict
309S-palmitoylHMM predict
395Phosphotyrosine(SRC)HMM predict
395SulfotyrosineHMM predict
522O-linkedHMM predict
524O-linkedHMM predict
580Phosphoserine(PKC)HMM predict
615Phosphotyrosine(SRC)HMM predict
634Phosphothreonine(PKC)HMM predict
676Phosphotyrosine(INSR)HMM predict
711Phosphoserine(MAPK)HMM predict
713O-linkedHMM predict
713Phosphoserine(IKK)HMM predict
724Phosphothreonine(MAPK)HMM predict
727Phosphotyrosine(SRC)HMM predict
756Phosphoserine(CDC2)HMM predict
766O-linkedHMM predict
766Phosphoserine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004186
  • Location:chr3 50167851-50201510
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 50149064 50150330 1266 18155
CTCF G2GSE9613 50152415 50153417 1002 14936
CTCF G2GSE9613 50159684 50160079 395 7970
CTCF G2GSE9613 50160331 50160618 287 7377
CTCF G2GSE9613 50160936 50161255 319 6756
CTCF G2GSE9613 50163169 50164366 1197 4084
CTCF G2GSE9613 50166566 50168204 1638 467
FOXA1 MCF7GSE15244 50162296 50163339 1043 5034
H3ac HepG2E 50162861 50163441 580 4701
KLF4 hESGSE17917 50158917 50159200 283 8793
RARA MCF7GSE15244 50162887 50163339 452 4739
RARG MCF7GSE15244 50162887 50163339 452 4739
TFAP2C MCF7GSE21234 50157512 50158130 618 10031
TFAP2C MCF7GSE21234 50162997 50164805 1808 3951
hScc1 BcellGSE12603 50152622 50153226 604 14928
hScc1 BcellGSE12603 50163522 50164166 644 4008
hScc1 BcellGSE12603 50166625 50168628 2003 225
hScc1 CdLSGSE12603 50166982 50168094 1112 314
hScc1 G2GSE9613 50166765 50168239 1474 350
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 50201748 50202539 791 633
hScc1 BcellGSE12603 50201707 50202297 590 492
hScc1 CdLSGSE12603 50201670 50202198 528 424
hScc1 G2GSE9613 50201355 50202368 1013 351
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 50182906 50183711 805 0
CTCF G2GSE9613 50170064 50170272 208 0
CTCF G2GSE9613 50174731 50175335 604 0
CTCF G2GSE9613 50175692 50176168 476 0
CTCF G2GSE9613 50181418 50181558 140 0
CTCF G2GSE9613 50182178 50182407 229 0
CTCF G2GSE9613 50185365 50185590 225 0
CTCF G2GSE9613 50187083 50188437 1354 0
CTCF G2GSE9613 50188766 50189096 330 0
CTCF G2GSE9613 50195655 50196271 616 0
CTCF G2GSE9613 50196725 50197260 535 0
CTCF G2GSE9613 50198778 50199046 268 0
CTCF G2GSE9613 50200312 50201094 782 0
Oct1 HelaGSE14283 50193358 50193410 52 0
P300 T30-glioblastomaGSE21026 50182889 50183797 908 0
Rb QuiescentGSE19898 50169948 50170052 104 0
TFAP2C MCF7GSE21234 50187625 50188293 668 0
TFAP2C MCF7GSE21234 50196087 50197107 1020 0
hScc1 BcellGSE12603 50184003 50184570 567 0
hScc1 BcellGSE12603 50186702 50187721 1019 0
hScc1 BcellGSE12603 50196944 50197260 316 0
hScc1 BcellGSE12603 50198778 50199188 410 0
hScc1 G2GSE9613 50194597 50195190 593 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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