AutismKB 2.0

Annotation Detail for CDH23


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Basic Information Top
Gene Symbol:CDH23 ( CDHR23,DKFZp434P2350,FLJ00233,FLJ36499,KIAA1774,KIAA1812,MGC102761,USH1D )
Gene Full Name: cadherin-related 23
Band: 10q22.1
Quick LinksEntrez ID:64072; OMIM: 605516; Uniprot ID:CAD23_HUMAN; ENSEMBL ID: ENSG00000107736; HGNC ID: 13733
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
155N-linked (GlcNAc...) (Potential).
206N-linked (GlcNAc...) (Potential).
349N-linked (GlcNAc...) (Potential).
393N-linked (GlcNAc...) (Potential).
434N-linked (GlcNAc...) (Potential).
466N-linked (GlcNAc...) (Potential).
472N-linked (GlcNAc...) (Potential).
652N-linked (GlcNAc...) (Potential).
694N-linked (GlcNAc...) (Potential).
765N-linked (GlcNAc...) (Potential).
810N-linked (GlcNAc...) (Potential).
827N-linked (GlcNAc...) (Potential).
941N-linked (GlcNAc...) (Potential).
1001N-linked (GlcNAc...) (Potential).
1018N-linked (GlcNAc...) (Potential).
1171N-linked (GlcNAc...) (Potential).
1282N-linked (GlcNAc...) (Potential).
1315N-linked (GlcNAc...) (Potential).
1473N-linked (GlcNAc...) (Potential).
1534N-linked (GlcNAc...) (Potential).
1651N-linked (GlcNAc...) (Potential).
1667N-linked (GlcNAc...) (Potential).
1818N-linked (GlcNAc...) (Potential).
1857N-linked (GlcNAc...) (Potential).
1889N-linked (GlcNAc...) (Potential).
1902N-linked (GlcNAc...) (Potential).
2013N-linked (GlcNAc...) (Potential).
2050N-linked (GlcNAc...) (Potential).
2129N-linked (GlcNAc...) (Potential).
2168N-linked (GlcNAc...) (Potential).
2195N-linked (GlcNAc...) (Potential).
2263N-linked (GlcNAc...) (Potential).
2357N-linked (GlcNAc...) (Potential).
2369N-linked (GlcNAc...) (Potential).
2616N-linked (GlcNAc...) (Potential).
2749N-linked (GlcNAc...) (Potential).
2808N-linked (GlcNAc...) (Potential).
2877N-linked (GlcNAc...) (Potential).
2896N-linked (GlcNAc...) (Potential).
2941N-linked (GlcNAc...) (Potential).
2981N-linked (GlcNAc...) (Potential).
3195Phosphotyrosine.
Location(AA) Modifications Resource
155N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
206N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
349N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
393N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
434N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
466N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
472N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
652N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
694N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
765N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
810N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
827N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
941N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1001N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1018N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1171N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1282N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1315N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1473N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1534N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1651N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1667N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1818N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1857N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1889N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1902N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2013N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2050N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2129N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2168N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2195N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2263N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2357N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2369N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2616N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2749N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2808N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2877N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2896N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2941N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
2981N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
155N-linkedHMM predict
195SulfotyrosineHMM predict
201Phosphotyrosine(SRC)HMM predict
206N-linkedHMM predict
246SulfotyrosineHMM predict
288Phosphotyrosine(Jak)HMM predict
326O-linkedHMM predict
331O-linkedHMM predict
332O-linkedHMM predict
349N-linkedHMM predict
353Phosphotyrosine(INSR)HMM predict
354Phosphoserine(IKK)HMM predict
393N-linkedHMM predict
394N-linkedHMM predict
434N-linkedHMM predict
443Phosphotyrosine(Syk)HMM predict
472N-linkedHMM predict
576Phosphoserine(CK1)HMM predict
590Phosphoserine(IKK)HMM predict
652N-linkedHMM predict
694N-linkedHMM predict
730Phosphothreonine(CK2)HMM predict
742Phosphotyrosine(INSR)HMM predict
765N-linkedHMM predict
810N-linkedHMM predict
827N-linkedHMM predict
836Phosphothreonine(PKA)HMM predict
941N-linkedHMM predict
972Phosphothreonine(CDC2)HMM predict
972Phosphothreonine(MAPK)HMM predict
976O-linkedHMM predict
977O-linkedHMM predict
977O-linkedHMM predict
977O-linkedHMM predict
978O-linkedHMM predict
978O-linkedHMM predict
979O-linkedHMM predict
979Phosphoserine(CK1)HMM predict
992Phosphothreonine(MAPK)HMM predict
1001N-linkedHMM predict
1018N-linkedHMM predict
1022N-linkedHMM predict
1110Phosphoserine(ATM)HMM predict
1171N-linkedHMM predict
1282N-linkedHMM predict
1353SulfotyrosineHMM predict
1440Phosphothreonine(PKC)HMM predict
1504Phosphothreonine(CDC2)HMM predict
1504Phosphothreonine(MAPK)HMM predict
1504Phosphothreonine(CDK)HMM predict
1615O-linkedHMM predict
1617O-linkedHMM predict
1651N-linkedHMM predict
1667N-linkedHMM predict
1726O-linkedHMM predict
1773Phosphoserine(CK1)HMM predict
1818N-linkedHMM predict
1857N-linkedHMM predict
1863N-linkedHMM predict
1864Phosphoserine(IKK)HMM predict
1889N-linkedHMM predict
1894N-linkedHMM predict
1902N-linkedHMM predict
1976Phosphothreonine(MAPK)HMM predict
1995Phosphotyrosine(Jak)HMM predict
1995Phosphotyrosine(Syk)HMM predict
2020Phosphothreonine(PKC)HMM predict
2050N-linkedHMM predict
2070Phosphoserine(CDC2)HMM predict
2129N-linkedHMM predict
2143Phosphothreonine(PKC)HMM predict
2168N-linkedHMM predict
2182Phosphoserine(IKK)HMM predict
2195N-linkedHMM predict
2263N-linkedHMM predict
2273Phosphoserine(PKG)HMM predict
2273Phosphoserine(PKB)HMM predict
2273PhosphoserineHMM predict
2290Phosphothreonine(MAPK)HMM predict
2310Phosphothreonine(MAPK)HMM predict
2314O-linkedHMM predict
2343Phosphotyrosine(EGFR)HMM predict
2357N-linkedHMM predict
2369N-linkedHMM predict
2377N-linkedHMM predict
2379Phosphoserine(CDC2)HMM predict
2407Phosphotyrosine(EGFR)HMM predict
2423O-linkedHMM predict
2425O-linkedHMM predict
2451N-linkedHMM predict
2492Phosphoserine(PKG)HMM predict
2519Phosphotyrosine(Syk)HMM predict
2530O-linkedHMM predict
2547Phosphoserine(CK1)HMM predict
2616N-linkedHMM predict
2633Phosphotyrosine(SRC)HMM predict
2633Phosphotyrosine(Syk)HMM predict
2702Phosphotyrosine(Abl)HMM predict
2729Phosphoserine(CDC2)HMM predict
2732Phosphotyrosine(SRC)HMM predict
2749N-linkedHMM predict
2808N-linkedHMM predict
2810Phosphoserine(IKK)HMM predict
2847Phosphothreonine(PKC)HMM predict
2941N-linkedHMM predict
2981N-linkedHMM predict
3063Phosphoserine(IKK)HMM predict
3155N-linkedHMM predict
3165Phosphoserine(CDC2)HMM predict
3165Phosphoserine(CDK)HMM predict
3187Phosphotyrosine(Syk)HMM predict
3242Phosphoserine(CK1)HMM predict
3245Phosphoserine(CK1)HMM predict
3331Phosphoserine(IKK)HMM predict
3335Phosphothreonine(MAPK)HMM predict
3335Phosphothreonine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022124
  • Location:chr10 72826696-73245658
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 73226387 73228481 2094 0
CTCF CD4GSE12889 73093782 73093993 211 0
CTCF CD4GSE12889 73126526 73126798 272 0
CTCF CD4GSE12889 73137973 73138267 294 0
CTCF CD4GSE12889 73203217 73203567 350 0
CTCF CD4GSE12889 73241736 73242073 337 0
CTCF CD4SISSRdata 73093782 73093993 211 0
CTCF CD4SISSRdata 73126526 73126798 272 0
CTCF CD4SISSRdata 73137973 73138267 294 0
CTCF CD4SISSRdata 73203217 73203567 350 0
CTCF CD4SISSRdata 73241736 73242073 337 0
CTCF HelaGSE12889 73126500 73126853 353 0
CTCF HelaGSE12889 73138025 73138409 384 0
CTCF JurkatGSE12889 73077361 73077571 210 0
CTCF JurkatGSE12889 73126449 73126871 422 0
Fos K562GSE19551 73226651 73227273 622 0
Myc K562GSE19551 73114078 73114586 508 0
Myc K562GSE19551 73241658 73242261 603 0
NRSF JurkatGSE13047 73224020 73228253 4233 0
NRSF mAbJurkat 73222905 73223394 489 0
NRSF mAbJurkat 73224151 73226320 2169 0
NRSF mAbJurkat 73226692 73227918 1226 0
NRSF-mono JurkatQuESTdata 73224135 73226276 2141 0
NRSF-poly JurkatQuESTdata 73224900 73226393 1493 0
Nanog hESGSE18292 73087444 73087758 314 0
Oct1 H2O2-HelaGSE14283 73159771 73159803 32 0
Oct1 H2O2-HelaGSE14283 73174864 73174907 43 0
Oct1 H2O2-HelaGSE14283 73207510 73207541 31 0
Oct1 H2O2-HelaGSE14283 73208840 73208869 29 0
Oct1 HelaGSE14283 73174866 73174907 41 0
Oct1 HelaGSE14283 73208838 73208866 28 0
PHF8 Hs68plusFBSGSE20725 73142805 73143950 1145 0
Rb GrowingGSE19898 73169786 73169980 194 0
Rb shRbQuiescentGSE19898 73144674 73144944 270 0
Rb shRbSenescenceGSE19898 73158268 73158468 200 0
TAF k562GSE8489 73243765 73243978 213 0
TFAP2C MCF7GSE21234 73143011 73143789 778 0
TFAP2C MCF7GSE21234 73158896 73159532 636 0
hScc1 BcellGSE12603 73082841 73083170 329 0
hScc1 BcellGSE12603 73093849 73094342 493 0
hScc1 BcellGSE12603 73113999 73114416 417 0
hScc1 BcellGSE12603 73126461 73127049 588 0
hScc1 BcellGSE12603 73137626 73138962 1336 0
hScc1 BcellGSE12603 73155746 73156068 322 0
hScc1 BcellGSE12603 73157625 73158424 799 0
hScc1 BcellGSE12603 73202757 73204190 1433 0
hScc1 BcellGSE12603 73212954 73213093 139 0
hScc1 BcellGSE12603 73220312 73220969 657 0
hScc1 BcellGSE12603 73241081 73241930 849 0
hScc1 CdLSGSE12603 73093849 73094165 316 0
hScc1 CdLSGSE12603 73126497 73126838 341 0
hScc1 CdLSGSE12603 73137698 73138497 799 0
hScc1 CdLSGSE12603 73155746 73156098 352 0
hScc1 G2GSE9613 73126562 73126938 376 0
hScc1 G2GSE9613 73137734 73139100 1366 0
hScc1 G2GSE9613 73203054 73203648 594 0
p63 keratinocytesGSE17611 73135110 73135931 821 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
3289 mRNA CDH23 chr10 72826696 73245659 149 mRNA C10orf105 chr10 73141472 73167587Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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