AutismKB 2.0

Annotation Detail for CLSTN2


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Basic Information Top
Gene Symbol:CLSTN2 ( ALC-GAMMA,CDHR13,CS2,CSTN2,FLJ39113,FLJ39499,MGC119560,alcagamma )
Gene Full Name: calsyntenin 2
Band: 3q23
Quick LinksEntrez ID:64084; OMIM: 611323; Uniprot ID:CSTN2_HUMAN; ENSEMBL ID: ENSG00000158258; HGNC ID: 17448
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
56N-linked (GlcNAc...) (Potential).
98N-linked (GlcNAc...) (Potential).
342N-linked (GlcNAc...) (Potential).
374N-linked (GlcNAc...) (Potential).
716N-linked (GlcNAc...) (Potential).
729N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
56N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
98N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
342N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
374N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
716N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
729N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
56N-linkedHMM predict
98N-linkedHMM predict
165Phosphotyrosine(SRC)HMM predict
175Phosphotyrosine(INSR)HMM predict
189Phosphoserine(ATM)HMM predict
336Phosphoserine(CDC2)HMM predict
336Phosphoserine(MAPK)HMM predict
336Phosphoserine(CDK)HMM predict
341O-linkedHMM predict
342N-linkedHMM predict
374N-linkedHMM predict
531Phosphoserine(ATM)HMM predict
549Phosphoserine(CK1)HMM predict
562N-linkedHMM predict
564Phosphoserine(ATM)HMM predict
604Phosphoserine(PKG)HMM predict
716N-linkedHMM predict
718Phosphoserine(CK1)HMM predict
729N-linkedHMM predict
731O-linkedHMM predict
796Phosphoserine(CK2)HMM predict
821Phosphoserine(CK1)HMM predict
822Phosphoserine(CK1)HMM predict
914Phosphoserine(CK1)HMM predict
915Phosphoserine(CK1)HMM predict
917Phosphoserine(ATM)HMM predict
919Phosphoserine(CK2)HMM predict
919Phosphoserine(PKA)HMM predict
922Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022131
  • Location:chr3 141136896-141769319
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 141136082 141137306 1224 203
FOXA1 MCF7GSE15244 141117503 141118675 1172 18808
Oct1 H2O2-HelaGSE14283 141124467 141124494 27 12416
RARA MCF7GSE15244 141117503 141118600 1097 18845
RARG MCF7GSE15244 141117503 141118600 1097 18845
TFAP2C MCF7GSE21234 141117695 141118554 859 18772
hScc1 G2GSE9613 141136049 141137475 1426 135
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Stat6 IL-4-hr1GSE17850 141770421 141770983 562 1383
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 141668249 141669302 1053 0
CTCF G2GSE9613 141214329 141214742 413 0
CTCF G2GSE9613 141217613 141217901 288 0
CTCF G2GSE9613 141252946 141253149 203 0
CTCF G2GSE9613 141292755 141293052 297 0
CTCF G2GSE9613 141301331 141301472 141 0
CTCF G2GSE9613 141323032 141323337 305 0
CTCF G2GSE9613 141330394 141330536 142 0
CTCF G2GSE9613 141339762 141339964 202 0
CTCF G2GSE9613 141417822 141417958 136 0
CTCF G2GSE9613 141426346 141426669 323 0
CTCF G2GSE9613 141445412 141445705 293 0
CTCF G2GSE9613 141478460 141478679 219 0
CTCF G2GSE9613 141542988 141543128 140 0
CTCF G2GSE9613 141572820 141573294 474 0
CTCF G2GSE9613 141747769 141748467 698 0
CTCF G2GSE9613 141754034 141754284 250 0
ER Fulvestrant-MCF7GSE14664 141662481 141662513 32 0
ER Fulvestrant-MCF7GSE14664 141694891 141694969 78 0
FOXA1 MCF7GSE15244 141137742 141138231 489 0
FOXA1 MCF7GSE15244 141142478 141143603 1125 0
FOXA1 MCF7GSE15244 141210243 141210656 413 0
FOXA1 MCF7GSE15244 141216878 141217382 504 0
FOXA1 MCF7GSE15244 141334927 141335293 366 0
FOXA1 MCF7GSE15244 141424647 141425615 968 0
FOXA1 MCF7GSE15244 141609990 141610262 272 0
FOXA1 MCF7GSE15244 141653983 141654352 369 0
FOXA1 MCF7GSE15244 141757496 141758056 560 0
FoxA1 MCF7MACSdata 141216649 141217036 387 0
H3K27me3 colorectalcancer 141137865 141138961 1096 0
Myc K562GSE19551 141330129 141330519 390 0
NRSF JurkatGSE13047 141171920 141172505 585 0
NRSF JurkatGSE13047 141408077 141408599 522 0
NRSF mAbJurkat 141170349 141171465 1116 0
NRSF mAbJurkat 141172097 141173283 1186 0
NRSF mAbJurkat 141403862 141404310 448 0
NRSF mAbJurkat 141406508 141408343 1835 0
NRSF mAbJurkat 141409513 141411023 1510 0
NRSF-mono JurkatQuESTdata 141171919 141172499 580 0
NRSF-mono JurkatQuESTdata 141408076 141408598 522 0
NRSF-poly JurkatQuESTdata 141172019 141172537 518 0
NRSF-poly JurkatQuESTdata 141408189 141408554 365 0
Nanog hESGSE18292 141205952 141206389 437 0
Nanog hESGSE18292 141405886 141406581 695 0
Nanog hESGSE18292 141543261 141543849 588 0
Nanog hESGSE18292 141711613 141712456 843 0
Oct1 H2O2-HelaGSE14283 141151827 141151863 36 0
Oct1 H2O2-HelaGSE14283 141204188 141204217 29 0
Oct1 H2O2-HelaGSE14283 141216718 141216746 28 0
Oct1 H2O2-HelaGSE14283 141245061 141245100 39 0
Oct1 H2O2-HelaGSE14283 141469612 141469646 34 0
Oct1 H2O2-HelaGSE14283 141529424 141529454 30 0
Oct1 H2O2-HelaGSE14283 141552593 141552643 50 0
Oct1 HelaGSE14283 141151828 141151862 34 0
Oct1 HelaGSE14283 141216703 141216746 43 0
Oct1 HelaGSE14283 141245061 141245101 40 0
Oct1 HelaGSE14283 141552602 141552643 41 0
Oct1 HelaGSE14283 141638329 141638389 60 0
Oct1 HelaGSE14283 141656557 141656588 31 0
Oct1 HelaGSE14283 141660123 141660167 44 0
Oct1 HelaGSE14283 141707838 141707870 32 0
Oct4 hESGSE21916 141711798 141712378 580 0
P300 T30-glioblastomaGSE21026 141668485 141669262 777 0
RARA MCF7GSE15244 141216878 141217343 465 0
RARG MCF7GSE15244 141216878 141217271 393 0
RARG MCF7GSE15244 141757533 141758091 558 0
RNAII Tamoxifen-MCF7GSE14664 141694872 141694935 63 0
Stat6 IL-4-hr4GSE17850 141242206 141242692 486 0
TFAP2C MCF7GSE21234 141216493 141217070 577 0
TFAP2C MCF7GSE21234 141330084 141330572 488 0
TFAP2C MCF7GSE21234 141441867 141442337 470 0
TFAP2C MCF7GSE21234 141592509 141593022 513 0
TFAP2C MCF7GSE21234 141635937 141636401 464 0
TFAP2C MCF7GSE21234 141730588 141731153 565 0
hScc1 BcellGSE12603 141700629 141700951 322 0
hScc1 CdLSGSE12603 141139335 141139586 251 0
hScc1 CdLSGSE12603 141252848 141253149 301 0
hScc1 CdLSGSE12603 141330394 141330833 439 0
hScc1 CdLSGSE12603 141417822 141418247 425 0
hScc1 CdLSGSE12603 141700629 141700987 358 0
hScc1 G2GSE9613 141252880 141253149 269 0
hScc1 G2GSE9613 141417822 141417993 171 0
hScc1 G2GSE9613 141753826 141754587 761 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18759 mRNA CLSTN2 chr3 141661259 141769615 3180 HTC chr3 141707149 141710329 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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