AutismKB 2.0

Annotation Detail for SET


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Basic Information Top
Gene Symbol:SET ( 2PP2A,I2PP2A,IGAAD,IPP2A2,PHAPII,TAF-I,TAF-IBETA )
Gene Full Name: SET nuclear oncogene
Band: 9q34.11
Quick LinksEntrez ID:6418; OMIM: 600960; Uniprot ID:SET_HUMAN; ENSEMBL ID: ENSG00000119335; HGNC ID: 10760
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N,N,N-trimethylalanine (By similarity).
7Phosphoserine.
30Phosphoserine (By similarity).
83N6-acetyllysine.
132N6-acetyllysine.
146Phosphotyrosine (By similarity).
150N6-acetyllysine.
172N6-acetyllysine.
Location(AA) Modifications Resource
7Phosphoserine.Swiss-Prot 53.0
7PhosphoserinePhospho.ELM 6.0
30Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
7Phosphoserine(CDC2)HMM predict
7Phosphoserine(IKK)HMM predict
73Phosphotyrosine(EGFR)HMM predict
159N-linkedHMM predict
180Phosphothreonine(PKC)HMM predict
233Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003011
  • Location:chr9 130491681-130498487
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 130485744 130487032 1288 5294
H3ac HepG2E 130488161 130488576 415 3313
Myc hESGSE17917 130485956 130486288 332 5560
Oct4 hESGSE17917 130485684 130486040 356 5820
PHF8 HeLaGSE20725 130490592 130492551 1959 110
Pol2 GM12878GSE19551 130485206 130487517 2311 5320
Rb shRbQuiescentGSE19898 130487389 130487590 201 4192
TFAP2C MCF7GSE21234 130485401 130486138 737 5912
USF1 HepG2E 130485841 130487203 1362 5160
USF2 HepG2E 130485959 130486987 1028 5209
hScc1 BcellGSE12603 130486361 130486771 410 5116
hScc1 BcellGSE12603 130490832 130491361 529 585
p130 QuiescentGSE19898 130486161 130486509 348 5347
p130 QuiescentGSE19898 130486512 130486684 172 5084
p130 SenescentGSE19898 130488279 130488532 253 3276
p130 shRbSenescentGSE19898 130486609 130486790 181 4982
p130 shRbSenescentGSE19898 130488424 130488669 245 3135
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 130499749 130499956 207 1365
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb shRbSenescenceGSE19898 130492524 130492785 261 0
TAF k562GSE8489 130492652 130493785 1133 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-199b-3p hsa-mir-199b 9 19900756
hsa-miR-199b-5p hsa-mir-199b 9 19900756
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
27080 mRNA SET chr9 128531414 128538221 527 EST chr9 128537062 128537589Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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