Annotation Detail for POPDC3
Basic Information Top
| Gene Symbol: | POPDC3 ( MGC22671,POP3,RP11-99L11.2,bA355M14.1 ) |
|---|---|
| Gene Full Name: | popeye domain containing 3 |
| Band: | 6q21 |
| Quick Links | Entrez ID:64208; OMIM: 605824; Uniprot ID:POPD3_HUMAN; ENSEMBL ID: ENSG00000132429; HGNC ID: 17649 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 4 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 4 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 5 | Phosphoserine | HMM predict |
| 10 | N-linked | HMM predict |
| 174 | Sulfotyrosine | HMM predict |
| 183 | Phosphoserine(ATM) | HMM predict |
| 200 | O-linked | HMM predict |
| 276 | Phosphoserine(CDC2) | HMM predict |
| 289 | Cysteine | HMM predict |
- RefSeq ID: NM_022361
- Location:chr6 105712469-105734562
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| P300 | T0-glioblastoma | GSE21026 | 105747067 | 105747645 | 578 | 12794 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Oct1 | H2O2-Hela | GSE14283 | 105711717 | 105711744 | 27 | 739 |
| RNAII | Tamoxifen-MCF7 | GSE14664 | 105711707 | 105711750 | 43 | 741 |
| hScc1 | Bcell | GSE12603 | 105704018 | 105704274 | 256 | 8324 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 105734079 | 105734895 | 816 | 0 |
| Fos | K562 | GSE19551 | 105730687 | 105731107 | 420 | 0 |
| H3K27me3 | colorectal | cancer | 105732275 | 105732769 | 494 | 0 |
| H3K27me3 | colorectal | cancer | 105733280 | 105733881 | 601 | 0 |
| Rb | shRbSenescence | GSE19898 | 105730829 | 105731116 | 287 | 0 |
| TFAP2C | MCF7 | GSE21234 | 105719093 | 105719368 | 275 | 0 |
| hScc1 | G2 | GSE9613 | 105734156 | 105734895 | 739 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22980 | mRNA | C6orf112 | chr6 | 105692254 | 105724510 | 12041 | mRNA | POPDC3 | chr6 | 105712469 | 105734563 | Non-exonic Bidirectional (NOB) pairs |