AutismKB 2.0

Annotation Detail for DCLRE1C


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Basic Information Top
Gene Symbol:DCLRE1C ( A-SCID,DCLREC1C,FLJ11360,FLJ36438,RS-SCID,SCIDA,SNM1C,hSNM1C )
Gene Full Name: DNA cross-link repair 1C
Band: 10p13
Quick LinksEntrez ID:64421; OMIM: 605988; Uniprot ID:DCR1C_HUMAN; ENSEMBL ID: ENSG00000152457; HGNC ID: 17642
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
645Phosphoserine; by ATM.
Location(AA) Modifications Resource
645Phosphoserine (by ATM).Swiss-Prot 53.0
Location(AA) Modification Resource
46Phosphothreonine(PKC)HMM predict
72Phosphoserine(MAPK)HMM predict
128N-linkedHMM predict
197Phosphoserine(CDC2)HMM predict
312Phosphotyrosine(EGFR)HMM predict
369Phosphotyrosine(SRC)HMM predict
380Phosphothreonine(PKC)HMM predict
385Phosphoserine(CK1)HMM predict
391SulfotyrosineHMM predict
391Phosphotyrosine(Syk)HMM predict
443Phosphoserine(CDK)HMM predict
457Phosphoserine(CK1)HMM predict
459Phosphoserine(CK2)HMM predict
459Phosphoserine(CK1)HMM predict
534Phosphoserine(ATM)HMM predict
536N-linkedHMM predict
538Phosphoserine(ATM)HMM predict
548Phosphoserine(ATM)HMM predict
553Phosphoserine(ATM)HMM predict
578Phosphotyrosine(EGFR)HMM predict
581Phosphothreonine(PKC)HMM predict
602Phosphotyrosine(Syk)HMM predict
602Phosphotyrosine(SRC)HMM predict
618O-linkedHMM predict
622O-linkedHMM predict
645Phosphoserine(ATM)HMM predict
656Phosphothreonine(CDC2)HMM predict
656Phosphothreonine(MAPK)HMM predict
676Phosphothreonine(PKC)HMM predict
686LysineHMM predict
687CysteineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001033857
  • Location:chr10 14988878-15036099
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 15053990 15054161 171 17976
CTCF CD4SISSRdata 15053990 15054161 171 17976
E2F4 G0GSE7516 15035771 15036591 820 82
GABP HelaGSE8489 15041848 15042376 528 6013
GABP HelaGSE8489 15052262 15052578 316 16321
GABP k562GSE8489 15041810 15042376 566 5994
H3K4me3 colorectalcancer 15042085 15042376 291 6131
H3ac HepG2E 15041883 15042376 493 6030
LIN9 SGSE7516 15035699 15036591 892 46
Nanog ESGSE20650 15041837 15042295 458 5967
Oct4 hESGSE17917 15041971 15042225 254 5999
PHF8 293TGSE20725 15035593 15036681 1088 38
PHF8 293TGSE20725 15040773 15042503 1730 5539
PHF8 HeLaGSE20725 15035523 15036750 1227 37
PHF8 HeLaGSE20725 15040909 15042401 1492 5556
PHF8 Hs68minusFBSGSE20725 15041468 15042295 827 5782
PHF8 Hs68plusFBSGSE20725 15040912 15042529 1617 5621
PolII HeLaGSE12783 15040899 15042844 1945 5772
RARG MCF7GSE15244 15041810 15042253 443 5932
Rb GrowingGSE19898 15036112 15036439 327 176
Rb QuiescentGSE19898 15036077 15036445 368 162
Rb QuiescentGSE19898 15041607 15042241 634 5825
Rb SenescentGSE19898 15035865 15036599 734 133
Rb SenescentGSE19898 15041183 15041751 568 5368
Rb shRbSenescenceGSE19898 15036088 15036475 387 182
p130 QuiescentGSE19898 15041889 15042306 417 5998
p130 SenescentGSE19898 15041398 15041677 279 5438
p130 SenescentGSE19898 15041823 15042348 525 5986
p130 shRbQuiescentGSE19898 15035599 15036683 1084 42
p130 shRbSenescentGSE19898 15035709 15036655 946 83
p130 shRbSenescentGSE19898 15041397 15041653 256 5426
p130 shRbSenescentGSE19898 15041730 15042277 547 5904
p130 G0GSE7516 15035771 15036521 750 47
p130 SGSE7516 15035735 15036658 923 97
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 15035378 15036619 1241 0
GABP k562GSE8489 15034741 15035475 734 0
H3K4me3 colorectalcancer 15034777 15035438 661 0
H3ac HepG2E 15034741 15035811 1070 0
LIN9 G0GSE7516 15035547 15036626 1079 0
PolII HeLaGSE12783 15034840 15036888 2048 0
TAF HelaGSE8489 15034741 15035475 734 0
TAF k562GSE8489 15034741 15035475 734 0
hScc1 BcellGSE12603 15035771 15036172 401 0
p130 QuiescentGSE19898 15035557 15036553 996 0
p130 SenescentGSE19898 15035321 15036703 1382 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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