AutismKB 2.0

Annotation Detail for SKP1


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Basic Information Top
Gene Symbol:SKP1 ( EMC19,MGC34403,OCP-II,OCP2,SKP1A,TCEB1L,p19A )
Gene Full Name: S-phase kinase-associated protein 1
Band: 5q31.1
Quick LinksEntrez ID:6500; OMIM: 601434; Uniprot ID:SKP1_HUMAN; ENSEMBL ID: ENSG00000113558; HGNC ID: 10899
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
9Phosphoserine(CK2)HMM predict
82Phosphothreonine(PKA)HMM predict
146Phosphothreonine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_170679
  • Location:chr5 133520467-133540582
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 133539788 133540907 1119 0
H3K4me3 colorectalcancer 133538477 133539928 1451 0
H3ac HepG2E 133538620 133540121 1501 0
P300 T30-glioblastomaGSE21026 133539791 133541261 1470 0
PHF8 Hs68plusFBSGSE20725 133539116 133541302 2186 0
Pol2 GM12878GSE19551 133539892 133541160 1268 0
TAF HelaGSE8489 133538428 133538946 518 0
TAF HelaGSE8489 133539376 133540074 698 0
TAF k562GSE8489 133538070 133539994 1924 0
hScc1 BcellGSE12603 133539685 133540808 1123 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 19126550
hsa-let-7a hsa-let-7a-2 11 19126550
hsa-let-7a hsa-let-7a-3 22 19126550
hsa-let-7a* hsa-let-7a-1 9 19126550
hsa-let-7a* hsa-let-7a-3 22 19126550
hsa-let-7b hsa-let-7b 22 19126550
hsa-let-7b* hsa-let-7b 22 19126550
hsa-let-7c hsa-let-7c 21 19126550
hsa-let-7c* hsa-let-7c 21 19126550
hsa-let-7d hsa-let-7d 9 19126550
hsa-let-7d* hsa-let-7d 9 19126550
hsa-let-7e hsa-let-7e 19 19126550
hsa-let-7e* hsa-let-7e 19 19126550
hsa-let-7f hsa-let-7f-1 9 19126550
hsa-let-7f hsa-let-7f-2 X 19126550
hsa-let-7f-1* hsa-let-7f-1 9 19126550
hsa-let-7f-2* hsa-let-7f-2 X 19126550
hsa-let-7g hsa-let-7g 3 19126550
hsa-let-7g* hsa-let-7g 3 19126550
hsa-let-7i hsa-let-7i 12 19126550
hsa-let-7i* hsa-let-7i 12 19126550
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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