AutismKB 2.0

Annotation Detail for RTN4R


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Basic Information Top
Gene Symbol:RTN4R ( NGR,NOGOR )
Gene Full Name: reticulon 4 receptor
Band: 22q11.21
Quick LinksEntrez ID:65078; OMIM: 605566; Uniprot ID:RTN4R_HUMAN; ENSEMBL ID: ENSG00000040608; HGNC ID: 18601
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
82N-linked (GlcNAc...).
179N-linked (GlcNAc...).
Location(AA) Modifications Resource
82N-linked (GlcNAc...).Swiss-Prot 53.0
179N-linked (GlcNAc...).Swiss-Prot 53.0
447GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
40Phosphothreonine(PKC)HMM predict
42Phosphoserine(IKK)HMM predict
82N-linkedHMM predict
113Phosphoserine(ATM)HMM predict
179N-linkedHMM predict
237N-linkedHMM predict
345Phosphoserine(IKK)HMM predict
368Phosphoserine(CDC2)HMM predict
372N-linkedHMM predict
380N-linkedHMM predict
382Phosphoserine(CDC2)HMM predict
410O-linkedHMM predict
423N-linkedHMM predict
452O-linkedHMM predict
458Phosphothreonine(CDK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_023004
  • Location:chr22 18608939-18635815
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 18635886 18636124 238 190
CTCF CD4GSE12889 18653331 18653558 227 17629
CTCF CD4SISSRdata 18635886 18636124 238 190
CTCF CD4SISSRdata 18653331 18653558 227 17629
CTCF HelaGSE12889 18653408 18653563 155 17670
CTCF JurkatGSE12889 18653320 18653630 310 17660
CTCF G2GSE9613 18653465 18653805 340 17820
CTCF G2GSE9613 18654189 18654444 255 18501
P300 T30-glioblastomaGSE21026 18647055 18647825 770 11625
Rb GrowingGSE19898 18637608 18637816 208 1897
TFAP2C MCF7GSE21234 18637798 18638805 1007 2486
hScc1 BcellGSE12603 18636634 18637104 470 1054
hScc1 BcellGSE12603 18641747 18642093 346 6105
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 18590596 18591387 791 17948
CTCF G2GSE9613 18603848 18604043 195 4994
CTCF G2GSE9613 18606187 18606558 371 2567
FOXA1 MCF7GSE15244 18589043 18589351 308 19743
TFAP2C MCF7GSE21234 18588900 18589431 531 19774
TFAP2C MCF7GSE21234 18605294 18605828 534 3379
hScc1 BcellGSE12603 18589496 18589827 331 19278
hScc1 BcellGSE12603 18598982 18599904 922 9497
hScc1 BcellGSE12603 18606340 18607307 967 2116
hScc1 BcellGSE12603 18608139 18608704 565 518
p63 keratinocytesGSE17611 18605312 18606152 840 3208
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 18626228 18626403 175 0
CTCF CD4SISSRdata 18626228 18626403 175 0
CTCF G2GSE9613 18635199 18636156 957 0
Rb GrowingGSE19898 18623576 18623696 120 0
TFAP2C MCF7GSE21234 18610677 18611512 835 0
TFAP2C MCF7GSE21234 18615696 18616008 312 0
TFAP2C MCF7GSE21234 18622648 18623130 482 0
hScc1 BcellGSE12603 18609060 18609823 763 0
hScc1 BcellGSE12603 18610155 18610536 381 0
hScc1 BcellGSE12603 18612144 18612496 352 0
hScc1 BcellGSE12603 18615993 18617741 1748 0
hScc1 BcellGSE12603 18634113 18636234 2121 0
hScc1 CdLSGSE12603 18634991 18636234 1243 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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