Annotation Detail for SLC6A1
Basic Information Top
| Gene Symbol: | SLC6A1 ( GABATHG,GABATR,GAT1 ) |
|---|---|
| Gene Full Name: | solute carrier family 6 (neurotransmitter transporter, GABA), member 1 |
| Band: | 3p25.3 |
| Quick Links | Entrez ID:6529; OMIM: 137165; Uniprot ID:SC6A1_HUMAN; ENSEMBL ID: ENSG00000157103; HGNC ID: 11042 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 176 | N-linked (GlcNAc...) (Potential). | |
| 181 | N-linked (GlcNAc...) (Potential). | |
| 184 | N-linked (GlcNAc...) (Potential). | |
| 599 | PDZ-binding. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 107 | Phosphotyrosine | Phospho.ELM 6.0 |
| 176 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 181 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 184 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 317 | Phosphotyrosine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 107 | Phosphotyrosine(INSR) | HMM predict |
| 176 | N-linked | HMM predict |
| 181 | N-linked | HMM predict |
| 184 | N-linked | HMM predict |
| 280 | Phosphoserine(PKG) | HMM predict |
| 317 | Phosphotyrosine(EGFR) | HMM predict |
| 324 | S-palmitoyl | HMM predict |
| 325 | S-palmitoyl | HMM predict |
| 378 | Phosphoserine(ATM) | HMM predict |
| 438 | N-linked | HMM predict |
| 493 | S-palmitoyl | HMM predict |
| 593 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_003042
- Location:chr3 11009455-11055933
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 10989661 | 10990090 | 429 | 19580 |
| CTCF | G2 | GSE9613 | 11000622 | 11000760 | 138 | 8765 |
| CTCF | G2 | GSE9613 | 11004030 | 11004202 | 172 | 5340 |
| CTCF | G2 | GSE9613 | 11008830 | 11009042 | 212 | 520 |
| Fos | K562 | GSE19551 | 10992444 | 10992940 | 496 | 16764 |
| H3K27me3 | colorectal | cancer | 11007759 | 11008458 | 699 | 1347 |
| H3K27me3 | colorectal | cancer | 11008830 | 11009042 | 212 | 520 |
| KLF4 | hES | GSE17917 | 11009053 | 11009450 | 397 | 204 |
| Oct1 | H2O2-Hela | GSE14283 | 11002585 | 11002612 | 27 | 6857 |
| hScc1 | Bcell | GSE12603 | 11003364 | 11003653 | 289 | 5947 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 11062358 | 11062523 | 165 | 6507 |
| CTCF | G2 | GSE9613 | 11064925 | 11065412 | 487 | 9235 |
| CTCF | G2 | GSE9613 | 11071655 | 11071799 | 144 | 15794 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 11009441 | 11009798 | 357 | 0 |
| CTCF | G2 | GSE9613 | 11011152 | 11011597 | 445 | 0 |
| CTCF | G2 | GSE9613 | 11013907 | 11014277 | 370 | 0 |
| CTCF | G2 | GSE9613 | 11032114 | 11032281 | 167 | 0 |
| CTCF | G2 | GSE9613 | 11033799 | 11034109 | 310 | 0 |
| CTCF | G2 | GSE9613 | 11038282 | 11038712 | 430 | 0 |
| CTCF | G2 | GSE9613 | 11039152 | 11039886 | 734 | 0 |
| CTCF | G2 | GSE9613 | 11045512 | 11046039 | 527 | 0 |
| CTCF | G2 | GSE9613 | 11047184 | 11047365 | 181 | 0 |
| CTCF | G2 | GSE9613 | 11051089 | 11051370 | 281 | 0 |
| CTCF | G2 | GSE9613 | 11052191 | 11052358 | 167 | 0 |
| CTCF | G2 | GSE9613 | 11053574 | 11053931 | 357 | 0 |
| FOXA1 | MCF7 | GSE15244 | 11019042 | 11019594 | 552 | 0 |
| H3K27me3 | colorectal | cancer | 11010365 | 11011851 | 1486 | 0 |
| RARA | MCF7 | GSE15244 | 11016982 | 11017459 | 477 | 0 |
| hScc1 | Bcell | GSE12603 | 11009441 | 11009798 | 357 | 0 |
| hScc1 | Bcell | GSE12603 | 11027489 | 11028044 | 555 | 0 |
| p63 | keratinocytes | GSE17611 | 11022187 | 11023166 | 979 | 0 |
Validated miRNA targets