Annotation Detail for SLC6A4
Basic Information Top
| Gene Symbol: | SLC6A4 ( 5-HTT,5-HTTLPR,5HTT,HTT,OCD1,SERT,hSERT ) |
|---|---|
| Gene Full Name: | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:6532; OMIM: 182138; Uniprot ID:SC6A4_HUMAN; ENSEMBL ID: ENSG00000108576; HGNC ID: 11050 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 208 | N-linked (GlcNAc...) (Potential). | |
| 217 | N-linked (GlcNAc...) (Potential). | |
| 611 | Phosphoserine (Potential). | |
| 613 | Phosphothreonine (Potential). | |
| 616 | Phosphothreonine (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 208 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 217 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 13 | Phosphoserine(CK2) | HMM predict |
| 33 | Phosphothreonine(MAPK) | HMM predict |
| 66 | O-linked | HMM predict |
| 67 | O-linked | HMM predict |
| 208 | N-linked | HMM predict |
| 211 | N-linked | HMM predict |
| 217 | N-linked | HMM predict |
| 226 | Phosphoserine(MAPK) | HMM predict |
| 232 | Phosphotyrosine(EGFR) | HMM predict |
| 532 | Phosphoserine(ATM) | HMM predict |
| 545 | Phosphoserine(CDC2) | HMM predict |
| 616 | Phosphothreonine(MAPK) | HMM predict |
- RefSeq ID: NM_001045
- Location:chr17 25549033-25586830
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 25586902 | 25587265 | 363 | 253 |
| CTCF | G2 | GSE9613 | 25587939 | 25588248 | 309 | 1263 |
| ER | E2-MCF7 | GSE14664 | 25590691 | 25590723 | 32 | 3877 |
| Nanog | hES | GSE18292 | 25587745 | 25587990 | 245 | 1037 |
| Oct1 | Hela | GSE14283 | 25590687 | 25590723 | 36 | 3875 |
| hScc1 | Bcell | GSE12603 | 25586723 | 25587083 | 360 | 73 |
| hScc1 | Bcell | GSE12603 | 25587797 | 25588248 | 451 | 1192 |
| hScc1 | Bcell | GSE12603 | 25589447 | 25589713 | 266 | 2750 |
| hScc1 | CdLS | GSE12603 | 25587764 | 25588511 | 747 | 1307 |
| p130 | shRbSenescent | GSE19898 | 25588812 | 25588967 | 155 | 2059 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| NFkBII | GM12878 | GSE19485 | 25563421 | 25565267 | 1846 | 0 |
| NFkBII | GM12892 | GSE19485 | 25558791 | 25559977 | 1186 | 0 |
| NFkBII | GM18526 | GSE19485 | 25563353 | 25565250 | 1897 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 25584408 | 25584455 | 47 | 0 |
| Oct1 | Hela | GSE14283 | 25552030 | 25552087 | 57 | 0 |
| RARA | MCF7 | GSE15244 | 25576905 | 25577527 | 622 | 0 |
| RARG | MCF7 | GSE15244 | 25576779 | 25577489 | 710 | 0 |
| hScc1 | Bcell | GSE12603 | 25563758 | 25564411 | 653 | 0 |
Validated miRNA targets