AutismKB 2.0

Annotation Detail for SLC6A11


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Basic Information Top
Gene Symbol:SLC6A11 ( GAT-3,GAT3,GAT4 )
Gene Full Name: solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Band: 3p25.3
Quick LinksEntrez ID:6538; OMIM: 607952; Uniprot ID:S6A11_HUMAN; ENSEMBL ID: ENSG00000132164; HGNC ID: 11044
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
187N-linked (GlcNAc...) (Potential).
190N-linked (GlcNAc...) (Potential).
198N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
187N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
190N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
198N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
21Phosphoserine(PKG)HMM predict
30O-linkedHMM predict
98S-palmitoylHMM predict
99S-palmitoylHMM predict
187N-linkedHMM predict
190N-linkedHMM predict
198N-linkedHMM predict
201Phosphoserine(MAPK)HMM predict
242S-palmitoylHMM predict
294Phosphoserine(CK1)HMM predict
338S-palmitoylHMM predict
339S-palmitoylHMM predict
540Phosphotyrosine(INSR)HMM predict
544Phosphotyrosine(INSR)HMM predict
544SulfotyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014229
  • Location:chr3 10832916-10955143
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 10828488 10828701 213 4322
ER Breast-CancerGSE22609 10815530 10816271 741 17016
ER MCF7GSE19013 10815508 10816059 551 17133
FOXA1 MCF7GSE15244 10828926 10829533 607 3687
H3K27me3 colorectalcancer 10831153 10831507 354 1587
H3K27me3 colorectalcancer 10832244 10832567 323 511
Oct1 HelaGSE14283 10813510 10813541 31 19391
USF2 HepG2E 10828992 10829497 505 3672
hScc1 BcellGSE12603 10832720 10833071 351 21
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 10962473 10962679 206 7433
CTCF CD4SISSRdata 10962473 10962679 206 7433
CTCF HelaGSE12889 10962449 10962735 286 7449
CTCF G2GSE9613 10955960 10956239 279 956
CTCF G2GSE9613 10958605 10959972 1367 4145
CTCF G2GSE9613 10962111 10962729 618 7277
CTCF G2GSE9613 10963654 10964115 461 8741
CTCF G2GSE9613 10967125 10967763 638 12301
CTCF G2GSE9613 10972467 10972931 464 17556
CTCF G2GSE9613 10973742 10974070 328 18763
Oct1 H2O2-HelaGSE14283 10973722 10973756 34 18596
hScc1 BcellGSE12603 10962403 10962729 326 7423
hScc1 BcellGSE12603 10965797 10966177 380 10844
hScc1 BcellGSE12603 10973397 10973990 593 18550
hScc1 G2GSE9613 10962403 10962729 326 7423
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 10832684 10833180 496 0
CTCF G2GSE9613 10852163 10852457 294 0
CTCF G2GSE9613 10854034 10854461 427 0
CTCF G2GSE9613 10869822 10870159 337 0
CTCF G2GSE9613 10872786 10873314 528 0
CTCF G2GSE9613 10900114 10900580 466 0
CTCF G2GSE9613 10935014 10935346 332 0
CTCF G2GSE9613 10942634 10942812 178 0
CTCF G2GSE9613 10943136 10943565 429 0
CTCF G2GSE9613 10944881 10945124 243 0
CTCF G2GSE9613 10945370 10945792 422 0
CTCF G2GSE9613 10950879 10951249 370 0
CTCF G2GSE9613 10954069 10954962 893 0
FOXA1 MCF7GSE15244 10872224 10872683 459 0
FOXA1 MCF7GSE15244 10951871 10952052 181 0
H3ac HepG2E 10833896 10834460 564 0
NRSF JurkatGSE13047 10883614 10884716 1102 0
NRSF mAbJurkat 10877098 10877843 745 0
NRSF mAbJurkat 10878232 10879180 948 0
NRSF mAbJurkat 10880917 10882039 1122 0
NRSF mAbJurkat 10883111 10884326 1215 0
NRSF mAbJurkat 10884811 10887283 2472 0
NRSF mAbJurkat 10887717 10888105 388 0
NRSF-mono JurkatQuESTdata 10883615 10884709 1094 0
NRSF-poly JurkatQuESTdata 10883681 10884593 912 0
RARA MCF7GSE15244 10878232 10878538 306 0
TFAP2C MCF7GSE21234 10849967 10850215 248 0
hScc1 BcellGSE12603 10869822 10870159 337 0
hScc1 BcellGSE12603 10900143 10900510 367 0
hScc1 BcellGSE12603 10936158 10936364 206 0
hScc1 BcellGSE12603 10943061 10943565 504 0
hScc1 BcellGSE12603 10954580 10955102 522 0
hScc1 G2GSE9613 10900114 10900615 501 0
hScc1 G2GSE9613 10943136 10943532 396 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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